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Structure paper

TitleDirected evolution of a TNA polymerase identifies independent paths to fidelity and catalysis.
Journal, issue, pagesNat Commun, Year 2025
Publish dateApr 21, 2025 (structure data deposition date)
AuthorsHajjar, M. / Maola, V.A. / Lee, J.J. / Holguin, M.J. / Quijano, R.N. / Nguyen, K.K. / Ho, K.L. / Medina, J.V. / Botello-Cornejo, E. / Barpuzary, B. ...Hajjar, M. / Maola, V.A. / Lee, J.J. / Holguin, M.J. / Quijano, R.N. / Nguyen, K.K. / Ho, K.L. / Medina, J.V. / Botello-Cornejo, E. / Barpuzary, B. / Chim, N. / Chaput, J.C.
External linksNat Commun / PubMed:41413390
MethodsX-ray diffraction
Resolution2.17 - 3.03 Å
Structure data

PDB-9oat:
TNA polymerase, 5-270, binary complex
Method: X-RAY DIFFRACTION / Resolution: 2.56 Å

PDB-9oau:
TNA polymerase, 7-47, binary complex
Method: X-RAY DIFFRACTION / Resolution: 2.18 Å

PDB-9oav:
TNA polymerase, 8-64, binary complex
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-9oaw:
TNA polymerase, 10-92, binary complex
Method: X-RAY DIFFRACTION / Resolution: 2.17 Å

PDB-9oax:
TNA polymerase, 5-270, ternary complex
Method: X-RAY DIFFRACTION / Resolution: 3.03 Å

PDB-9oay:
TNA polymerase, 8-64, ternary complex
Method: X-RAY DIFFRACTION / Resolution: 2.38 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-5CY:
1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y

ChemComp-GOL:
GLYCEROL

ChemComp-9O7:
[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-3-yl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate

ChemComp-IOD:
IODIDE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CL:
Unknown entry

Source
  • thermococcus kodakarensis (archaea)
  • synthetic construct (others)
KeywordsTRANSFERASE/DNA / Enzyme Engineering / B-Family Polymerase / TNA Polymerase / Polymerase / Binary Complex / TRANSFERASE / TRANSFERASE-DNA complex / Ternary Complex

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