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Structure paper

TitleStructural analysis of the ribosome assembly factor Nep1, an N1-specific pseudouridine methyltransferase, reveals mechanistic insights.
Journal, issue, pagesFebs J., Vol. 292, Page 2338-2358, Year 2025
Publish dateSep 6, 2024 (structure data deposition date)
AuthorsSaha, S. / Kanaujia, S.P.
External linksFebs J. / PubMed:39918246
MethodsX-ray diffraction
Resolution2.01 - 3.1 Å
Structure data

PDB-9jgb:
Crystal structure of Nep1 from Pyrococcus horikoshii OT3
Method: X-RAY DIFFRACTION / Resolution: 3.1 Å

PDB-9jgc:
Crystal structure of Nep1 in complex with adenosine from Pyrococcus horikoshii OT3
Method: X-RAY DIFFRACTION / Resolution: 2.01 Å

PDB-9jgd:
Crystal structure of Nep1 in complex with 5'-methylthioadenosine from Pyrococcus horikoshii OT3
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-SO3:
SULFITE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-CL:
Unknown entry

ChemComp-ADN:
ADENOSINE

ChemComp-MTA:
5'-DEOXY-5'-METHYLTHIOADENOSINE

ChemComp-GOL:
GLYCEROL

ChemComp-ACT:
ACETATE ION

Source
  • pyrococcus horikoshii ot3 (archaea)
KeywordsTRANSFERASE / Conserved arginine residues / Globular loop extension / Inter-subunit interactions / Nep1 / N1-pseudouridine methyltransferase / Trefoil knot

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