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TitleStructural basis for ring-opening fluorescence by the RhoBAST RNA aptamer.
Journal, issue, pagesNucleic Acids Res., Vol. 53, Year 2025
Publish dateMay 17, 2024 (structure data deposition date)
AuthorsSiwik, S.H. / Wierzba, A.J. / Lennon, S.R. / Olenginski, L.T. / Palmer, A.E. / Batey, R.T.
External linksNucleic Acids Res. / PubMed:40598898
MethodsX-ray diffraction
Resolution2.1 - 2.8 Å
Structure data

PDB-9bun:
RhoBAST aptamer RNA in complex with 5(6)-carboxytetramethylrhodamine
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-9dxl:
RhoBAST RNA aptamer in complex with the SpyRho555 analogue, MaP555
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

Chemicals

ChemComp-IRI:
IRIDIUM HEXAMMINE ION

ChemComp-FH8:
5-carboxy methylrhodamine

ChemComp-HOH:
WATER

ChemComp-BA:
Unknown entry

PDB-1bc9:
CYTOHESIN-1/B2-1 SEC7 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE

Source
  • synthetic construct (others)
KeywordsRNA / aptamer / fluorophore / dye / TAMRA / MaP555

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