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Structure paper

TitleStructure and dynamics of Proteus vulgaris tryptophan indole-lyase complexes with l-ethionine and l-alanine.
Journal, issue, pagesArch. Biochem. Biophys., Vol. 768, Page 110402-110402, Year 2025
Publish dateNov 22, 2023 (structure data deposition date)
AuthorsPhillips, R.S. / Brown, S.M.
External linksArch. Biochem. Biophys. / PubMed:40147499
MethodsX-ray diffraction
Resolution1.81 - 1.96 Å
Structure data

PDB-8v2k:
Proteus vulgaris tryptophan indole-lyase complexed with L-alanine
Method: X-RAY DIFFRACTION / Resolution: 1.81 Å

PDB-8v4a:
Proteus vulgaris tryptophan indole-lyase complexed with L-ethionine
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-9dy7:
Proteus vulgaris tryptophan indole-lyase complexed with L-ethionine and Na+
Method: X-RAY DIFFRACTION / Resolution: 1.87 Å

Chemicals

ChemComp-K:
Unknown entry

ChemComp-F0G:
(E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-alanine

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-PLI:
(2E)-2-{[(Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4(1H)-YLIDENE}METHYL]IMINO}PROPANOIC ACID

ChemComp-HOH:
WATER

ChemComp-YAE:
(E)-S-ethyl-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-homocysteine

ChemComp-YAR:
(2E)-4-(ethylsulfanyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}butanoic acid

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-ESC:
2-AMINO-4-ETHYL SULFANYL BUTYRIC ACID

ChemComp-NA:
Unknown entry

Source
  • proteus vulgaris (bacteria)
KeywordsLYASE / pyridoxal-5'-phosphate / fold I / tetramer / aminotransferase fold / cation activation / inhibitor complex

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