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Structure paper

TitleInfluence of pump laser fluence on ultrafast myoglobin structural dynamics.
Journal, issue, pagesNature, Vol. 626, Page 905-911, Year 2024
Publish dateNov 9, 2022 (structure data deposition date)
AuthorsBarends, T.R.M. / Gorel, A. / Bhattacharyya, S. / Schiro, G. / Bacellar, C. / Cirelli, C. / Colletier, J.P. / Foucar, L. / Grunbein, M.L. / Hartmann, E. ...Barends, T.R.M. / Gorel, A. / Bhattacharyya, S. / Schiro, G. / Bacellar, C. / Cirelli, C. / Colletier, J.P. / Foucar, L. / Grunbein, M.L. / Hartmann, E. / Hilpert, M. / Holton, J.M. / Johnson, P.J.M. / Kloos, M. / Knopp, G. / Marekha, B. / Nass, K. / Nass Kovacs, G. / Ozerov, D. / Stricker, M. / Weik, M. / Doak, R.B. / Shoeman, R.L. / Milne, C.J. / Huix-Rotllant, M. / Cammarata, M. / Schlichting, I.
External linksNature / PubMed:38355794
MethodsX-ray diffraction
Resolution1.29 - 1.4 Å
Structure data

PDB-8bkh:
Carboxymyoglobin dark state for comparison with power titration and 23 / 101 mJ/cm2 time series
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-8bkn:
Carboxymyoglobin dark state for comparison with 5 mJ/cm2 time series
Method: X-RAY DIFFRACTION / Resolution: 1.29 Å

PDB-8r8f:
Ensemble-refined carboxymyoglobin photolysis power titration, 6 mJ/cm2
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r8g:
Ensemble-refined carboxymyoglobin photolysis power titration, 18 mJ/cm2
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r8h:
Ensemble-refined carboxymyoglobin photolysis power titration, 31 mJ/cm2
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r8i:
Ensemble-refined carboxymyoglobin photolysis power titration, 56 mJ/cm2
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r8j:
Ensemble-refined carboxymyoglobin photolysis power titration, 101 mJ/cm2
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r8w:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 254 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r8x:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 327 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r8y:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 402 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r8z:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 471 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r90:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 604 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r91:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 627 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r92:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 702 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r93:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 847 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r94:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 1001 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r95:
Multicopy-refined carboxymyoglobin photolysis time series at 5 mJ/cm2 laser fluence, 1401 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9c:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 320 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9d:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 399 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9e:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 469 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9f:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 537 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9g:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 600 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9h:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 661 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9i:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 733 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9j:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 822 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9k:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 922 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9l:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1036 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9m:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1143 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9n:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1224 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9p:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1297 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8r9q:
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 1373 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra1:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 312 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra2:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 392 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra3:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 462 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra4:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 527 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra5:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 590 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra6:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 655 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra7:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 722 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra8:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 802 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8ra9:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 907 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8raa:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1023 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8rab:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1112 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8rac:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1174 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8rad:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1235 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8rae:
Multicopy-refined carboxymyoglobin photolysis time series at 101 mJ/cm2 laser fluence, 1303 fs time delay
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-SO4:
SULFATE ION

ChemComp-CMO:
CARBON MONOXIDE

ChemComp-HOH:
WATER

Source
  • equus caballus (horse)
KeywordsOXYGEN STORAGE / XFEL / SFX / photolysis / pump-probe / Free-electron Laser / Serial Femtosecond Crystallography / time-resolved crystallography / serial crystallography

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