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Titlebeta-l- Arabino furano-cyclitol Aziridines Are Covalent Broad-Spectrum Inhibitors and Activity-Based Probes for Retaining beta-l-Arabinofuranosidases.
Journal, issue, pagesAcs Chem. Biol., Vol. 18, Page 2564-2573, Year 2023
Publish dateSep 2, 2023 (structure data deposition date)
AuthorsBorlandelli, V. / Offen, W. / Moroz, O. / Nin-Hill, A. / McGregor, N. / Binkhorst, L. / Ishiwata, A. / Armstrong, Z. / Artola, M. / Rovira, C. ...Borlandelli, V. / Offen, W. / Moroz, O. / Nin-Hill, A. / McGregor, N. / Binkhorst, L. / Ishiwata, A. / Armstrong, Z. / Artola, M. / Rovira, C. / Davies, G.J. / Overkleeft, H.S.
External linksAcs Chem. Biol. / PubMed:38051515
MethodsX-ray diffraction
Resolution2.35 - 2.4 Å
Structure data

PDB-8qf2:
Beta-L-Arabinofurano-cyclitol Aziridines are Cysteine-directed Broad-spectrum Inhibitors and Activity-based Probes for Retaining Beta-L-arabinofuranosidases
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-8qf8:
GH146 beta-L-arabinofuranosidase from Bacteroides thetaioatomicron in complex with beta-l-arabinofurano cyclophellitol aziridine
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-UI5:
(1~{S},2~{S},3~{S},4~{R})-4-azanyl-3-(hydroxymethyl)cyclopentane-1,2-diol

ChemComp-HOH:
WATER

ChemComp-UHU:
(1~{S},2~{S},3~{S},4~{S},5~{S})-4-(hydroxymethyl)-6-azabicyclo[3.1.0]hexane-2,3-diol

Source
  • bifidobacterium longum (bacteria)
  • bacteroides thetaiotaomicron (bacteria)
KeywordsHYDROLASE / arabinofuranosidase / activity-based probe / cyclophellitol aziridine / btGH146 / inhibitors / fluorescent probes

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