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Structure paper

TitleBeyond genetics: Deciphering the impact of missense variants in CAD deficiency.
Journal, issue, pagesJ Inherit Metab Dis, Vol. 46, Page 1170-1185, Year 2023
Publish dateJun 9, 2023 (structure data deposition date)
AuthorsDel Cano-Ochoa, F. / Ng, B.G. / Rubio-Del-Campo, A. / Mahajan, S. / Wilson, M.P. / Vilar, M. / Rymen, D. / Sanchez-Pintos, P. / Kenny, J. / Ley Martos, M. ...Del Cano-Ochoa, F. / Ng, B.G. / Rubio-Del-Campo, A. / Mahajan, S. / Wilson, M.P. / Vilar, M. / Rymen, D. / Sanchez-Pintos, P. / Kenny, J. / Ley Martos, M. / Campos, T. / Wortmann, S.B. / Freeze, H.H. / Ramon-Maiques, S.
External linksJ Inherit Metab Dis / PubMed:37540500
MethodsX-ray diffraction
Resolution1.28 - 2.06 Å
Structure data

PDB-8pbe:
Mutant K1556T of the dihydroorotase domain of human CAD protein bound to the substrate carbamoyl aspartate
Method: X-RAY DIFFRACTION / Resolution: 1.71 Å

PDB-8pbg:
Mutant K1556T of the dihydroorotase domain of human CAD protein bound to the inhibitor fluoroorotate
Method: X-RAY DIFFRACTION / Resolution: 1.46 Å

PDB-8pbh:
Mutant R1617Q of the dihydroorotase domain of human CAD protein bound to the substrate carbamoyl aspartate
Method: X-RAY DIFFRACTION / Resolution: 1.87 Å

PDB-8pbi:
Mutant R1617Q of the dihydroorotase domain of human CAD protein bound to the inhibitor fluoroorotate
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-8pbj:
Mutant R1722W of the dihydroorotase domain of human CAD protein bound to the substrate carbamoyl aspartate
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-8pbk:
Mutant R1722W of the dihydroorotase domain of human CAD protein bound to the inhibitor fluoorotate
Method: X-RAY DIFFRACTION / Resolution: 1.69 Å

PDB-8pbm:
Mutant R1789Q of the dihydroorotase domain of human CAD protein bound to the substrate dihydroorotate
Method: X-RAY DIFFRACTION / Resolution: 1.28 Å

PDB-8pbn:
Mutant R1789Q of the dihydroorotase domain of human CAD protein bound to the inhibitor fluoorotate
Method: X-RAY DIFFRACTION / Resolution: 1.71 Å

PDB-8pbp:
Mutant R1785C of the dihydroorotase domain of human CAD protein bound to the substrate carbamoyl aspartate
Method: X-RAY DIFFRACTION / Resolution: 1.54 Å

PDB-8pbq:
Mutant R1810Q of the dihydroorotase domain of human CAD protein bound to the substrates
Method: X-RAY DIFFRACTION / Resolution: 1.54 Å

PDB-8pbr:
Mutant R1475Q of the dihydroorotase domain of human CAD protein in apo form
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

PDB-8pbs:
Mutant K1482M of the dihydroorotase domain of human CAD protein in apo form
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-8pbt:
Mutant K1482M of the dihydroorotase domain of human CAD protein bound to the substrate dihydroorotate
Method: X-RAY DIFFRACTION / Resolution: 1.43 Å

PDB-8pbu:
Mutant K1482M of the dihydroorotase domain of human CAD protein bound to the inhibitor fluoorotate
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

Chemicals

ChemComp-FMT:
FORMIC ACID

ChemComp-NCD:
N-CARBAMOYL-L-ASPARTATE

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-FOT:
5-FLUORO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID

ChemComp-NA:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-DOR:
(4S)-2,6-DIOXOHEXAHYDROPYRIMIDINE-4-CARBOXYLIC ACID

Source
  • homo sapiens (human)
KeywordsHYDROLASE / Nucleotide metabolism / de novo pyrimidine synthesis / CAD disease / multienzymatic protein / zinc / carboxylated lysine / BIOSYNTHETIC PROTEIN

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