PDB-8dx2: HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-amino-3-bromopyridine at multiple sites Method: X-RAY DIFFRACTION / Resolution: 2 Å
PDB-8dx3: HIV-1 reverse transcriptase/rilpivirine with bound fragment 3-bromobenzylamine in the thumb subdomain Method: X-RAY DIFFRACTION / Resolution: 2.06 Å
PDB-8dx8: HIV-1 reverse transcriptase/rilpivirine with bound fragment 2-chloro-6-fluorophenethylamine at the 415 site Method: X-RAY DIFFRACTION / Resolution: 1.85 Å
PDB-8dxb: HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-fluoroindole-2-carboxylic acid at the NNRTI Adjacent site Method: X-RAY DIFFRACTION / Resolution: 2.1 Å
PDB-8dxe: HIV-1 reverse transcriptase/rilpivirine with bound fragment 2-amino-6-fluorobenzonitrile at the NNRTI adjacent site Method: X-RAY DIFFRACTION / Resolution: 1.85 Å
PDB-8dxg: HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-(trifluoromethyl)pyridin-2-ol at W24 site Method: X-RAY DIFFRACTION / Resolution: 2.1 Å
PDB-8dxh: HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-fluoroquinazolin-4-ol at W266 site Method: X-RAY DIFFRACTION / Resolution: 1.8 Å
PDB-8dxi: HIV-1 reverse transcriptase/rilpivirine with bound fragment [1-(4-fluorophenyl)-5-methyl-1H-pyrazol-4-yl]methanol at multiple sites Method: X-RAY DIFFRACTION / Resolution: 1.95 Å
PDB-8dxj: HIV-1 reverse transcriptase/rilpivirine with bound fragment 1-N-methyl-4-(trifluoromethyl)benzene-1,2-diamine at the NNRTI adjacent site Method: X-RAY DIFFRACTION / Resolution: 1.8 Å
PDB-8dxk: HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-bromopyrazole at multiple sites Method: X-RAY DIFFRACTION / Resolution: 2 Å
PDB-8dxl: HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-iodopyrazole at multiple sites Method: X-RAY DIFFRACTION / Resolution: 2.25 Å
PDB-8dxm: HIV-1 reverse transcriptase/rilpivirine with bound fragment 4-bromophenol at the Knuckles site Method: X-RAY DIFFRACTION / Resolution: 1.99 Å
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator