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Structure paper

TitleLegionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain.
Journal, issue, pagesNat Commun, Vol. 15, Page 2452-2452, Year 2024
Publish dateJul 8, 2022 (structure data deposition date)
AuthorsZhang, Z. / Fu, J. / Rack, J.G.M. / Li, C. / Voorneveld, J. / Filippov, D.V. / Ahel, I. / Luo, Z.Q. / Das, C.
External linksNat Commun / PubMed:38503748
MethodsX-ray diffraction
Resolution1.86 - 2.28 Å
Structure data

PDB-8dmp:
Crystal structure of Legionella pneumophila macrodomain effector MavL
Method: X-RAY DIFFRACTION / Resolution: 2.17 Å

PDB-8dmq:
Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester
Method: X-RAY DIFFRACTION / Resolution: 2.195 Å

PDB-8dmr:
Legionella macrodomain effector MavL R370A in complex with ADP-ribose
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-8dms:
Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-8dmt:
Crystal structure of macrodomain CG2909 from Drosophila melanogaster in complex with ADP-ribose
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-8dmu:
Crystal structure of macrodomain CG3568 from Drosophila melanogaster in complex with ADP-ribose
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-FLC:
CITRATE ANION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-GVE:
METHYL 4-AMINOBUTANOATE

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-AR6:
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-NA:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-NI:
NICKEL (II) ION

ChemComp-CL:
Unknown entry

Source
  • legionella pneumophila (bacteria)
  • homo sapiens (human)
  • drosophila melanogaster (fruit fly)
KeywordsANTITOXIN / Macrodomain / Effector / Glycohydrolase / ADP-ribose / Covalent complex / Complex / Metaeffector / HYDROLASE

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