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Structure paper

TitleStructural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9.
Journal, issue, pagesNat. Chem. Biol., Vol. 19, Page 1022-1030, Year 2023
Publish dateMay 26, 2022 (structure data deposition date)
AuthorsKadirvelraj, R. / Boruah, B.M. / Wang, S. / Chapla, D. / Huang, C. / Ramiah, A. / Hudson, K.L. / Prudden, A.R. / Boons, G.J. / Withers, S.G. ...Kadirvelraj, R. / Boruah, B.M. / Wang, S. / Chapla, D. / Huang, C. / Ramiah, A. / Hudson, K.L. / Prudden, A.R. / Boons, G.J. / Withers, S.G. / Wood, Z.A. / Moremen, K.W.
External linksNat. Chem. Biol. / PubMed:37202521
MethodsX-ray diffraction
Resolution1.09 - 2.1 Å
Structure data

PDB-8d0o:
Human alpha1,3-fucosyltransferase FUT9, heavy atom derivative
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8d0p:
Human FUT9, unliganded
Method: X-RAY DIFFRACTION / Resolution: 1.09 Å

PDB-8d0q:
Human FUT9 bound to GDP-CF3-Fucose and H-Type 2
Method: X-RAY DIFFRACTION / Resolution: 1.39 Å

PDB-8d0r:
Human FUT9 bound to GDP and H-Type 2
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-8d0s:
Human FUT9 bound to GDP and LNnT
Method: X-RAY DIFFRACTION / Resolution: 1.37 Å

PDB-8d0u:
Human FUT9 bound to GDP
Method: X-RAY DIFFRACTION / Resolution: 1.29 Å

PDB-8d0w:
Human FUT9 bound to H-Type 2
Method: X-RAY DIFFRACTION / Resolution: 1.332 Å

PDB-8d0x:
Human FUT9 bound to LNnT
Method: X-RAY DIFFRACTION / Resolution: 1.33 Å

Chemicals

ChemComp-IOD:
IODIDE ION

ChemComp-CS:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-6CK:
[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(trifluoromethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

ChemComp-GOL:
GLYCEROL

Source
  • homo sapiens (human)
KeywordsTRANSFERASE / Glycosyltransferase / Alpha-(1 / 3)-fucosyltransferase / GT 10 / GT-B fold / Inverting mechanism

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