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Structure paper

TitleStructure of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC with PEG linker (conformation #2)
Journal, issue, pagesTo Be Published
Publish dateOct 12, 2022 (structure data deposition date)
AuthorsKraemer, A. / Doelle, A. / Knapp, S. / Structural Genomics Consortium (SGC)
External linksSearch PubMed
MethodsX-ray diffraction
Resolution1.7 - 2.05 Å
Structure data

PDB-8bb2:
Structure of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC with PEG linker (conformation #2)
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-8bfm:
Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) in complex with FZ331
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

Chemicals

ChemComp-SCN:
THIOCYANATE ION

ChemComp-Q3X:
~{N}-[5-[4-[2-[2-[2-[2-[3-[[3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanylidene-propoxy]ethoxy]ethoxy]ethoxy]ethylcarbamoyl]phenyl]-2-(4-methylpiperazin-1-yl)phenyl]-6-oxidanylidene-4-(trifluoromethyl)-3~{H}-pyridine-3-carboxamide

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-QI6:
pyrazolo[5,1-a]phthalazin-6-amine

Source
  • homo sapiens (human)
KeywordsLIGASE / E3-Ligase / WDR5 / VHL / Elongin / TRANSFERASE / CAMK1D / Kinase

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