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Structure paper

TitleMillisecond cryo-trapping by the spitrobot crystal plunger simplifies time-resolved crystallography.
Journal, issue, pagesNat Commun, Vol. 14, Page 2365-2365, Year 2023
Publish dateAug 29, 2022 (structure data deposition date)
AuthorsMehrabi, P. / Sung, S. / von Stetten, D. / Prester, A. / Hatton, C.E. / Kleine-Dopke, S. / Berkes, A. / Gore, G. / Leimkohl, J.P. / Schikora, H. ...Mehrabi, P. / Sung, S. / von Stetten, D. / Prester, A. / Hatton, C.E. / Kleine-Dopke, S. / Berkes, A. / Gore, G. / Leimkohl, J.P. / Schikora, H. / Kollewe, M. / Rohde, H. / Wilmanns, M. / Tellkamp, F. / Schulz, E.C.
External linksNat Commun / PubMed:37185266
MethodsX-ray diffraction
Resolution1.47 - 2.5 Å
Structure data

PDB-8aw8:
Xylose Isomerase in 70% relative humidity environment
Method: X-RAY DIFFRACTION / Resolution: 1.63 Å

PDB-8aw9:
Xylose Isomerase in 75% relative humidity environment
Method: X-RAY DIFFRACTION / Resolution: 1.62 Å

PDB-8awb:
Xylose Isomerase in 90% relative humidity environment
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-8awc:
Xylose Isomerase in 85% relative humidity environment
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-8awd:
Xylose Isomerase in 95% relative humidity environment
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-8awe:
Xylose Isomerase in 99% relative humidity environment
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-8awf:
Xylose Isomerase in 80% relative humidity environment
Method: X-RAY DIFFRACTION / Resolution: 1.61 Å

PDB-8aws:
Millisecond cryo-trapping by the spitrobot crystal plunger, Xylose Isomerase with Glucose at 50ms
Method: X-RAY DIFFRACTION / Resolution: 2.26 Å

PDB-8awu:
Millisecond cryo-trapping by the spitrobot crystal plunger, Xylose Isomerase with Glucose at 250ms
Method: X-RAY DIFFRACTION / Resolution: 1.47 Å

PDB-8awv:
Millisecond cryo-trapping by the spitrobot crystal plunger, Xylose Isomerase with Glucose at 500ms
Method: X-RAY DIFFRACTION / Resolution: 2.08 Å

PDB-8awx:
Millisecond cryo-trapping by the spitrobot crystal plunger, Xylose Isomerase with Glucose at 1s
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-8awy:
Millisecond cryo-trapping by the spitrobot crystal plunger, Serial measurement Xylose Isomerase with 2,3-butanediol at 50ms
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-8b03:
TRYPTOPHAN SYNTHASE - Cryo-trapping by the spitrobot crystal plunger after 0 sec
Method: X-RAY DIFFRACTION / Resolution: 2.22 Å

PDB-8b05:
TRYPTOPHAN SYNTHASE - Cryo-trapping by the spitrobot crystal plunger after 20 sec
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8b06:
TRYPTOPHAN SYNTHASE - Cryo-trapping by the spitrobot crystal plunger after 25 sec
Method: X-RAY DIFFRACTION / Resolution: 2.49 Å

PDB-8b08:
TRYPTOPHAN SYNTHASE - Cryo-trapping by the spitrobot crystal plunger after 30 sec
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-8b2o:
Millisecond cryo-trapping by the spitrobot crystal plunger, CTX-M-14 E166A, Ampicillin, 5 sec
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-8b2v:
Millisecond cryo-trapping by the spitrobot crystal plunger, CTX-M-14 E166A Ampicillin, 1 sec
Method: X-RAY DIFFRACTION / Resolution: 1.73 Å

PDB-8b2w:
Millisecond cryo-trapping by the spitrobot crystal plunger, CTX-M-14 E166A, Ampicillin, 500 MS
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-8b3m:
Millisecond cryo-trapping by the spitrobot crystal plunger, CTXM-14 Avibactam complex, SSX, 1 sec
Method: X-RAY DIFFRACTION / Resolution: 1.97 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-MN:
Unknown entry

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-HOH:
WATER / Water

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER / Diethylene glycol

ChemComp-BGC:
beta-D-glucopyranose / Glucose

ChemComp-GLC:
alpha-D-glucopyranose / Glucose

ChemComp-BU9:
Meso-2,3-Butanediol

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE / Pyridoxal phosphate

ChemComp-CS:
Unknown entry

ChemComp-CL:
Unknown entry / Chloride

ChemComp-PLS:
[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE

ChemComp-IND:
INDOLE / Indole

ChemComp-SER:
SERINE / Serine

ChemComp-G3P:
SN-GLYCEROL-3-PHOSPHATE / Glycerol 3-phosphate

ChemComp-AIX:
(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid

ChemComp-NXL:
(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide / antibiotic, inhibitor*YM / Avibactam

Source
  • streptomyces rubiginosus (bacteria)
  • salmonella enterica subsp. enterica serovar typhimurium (bacteria)
  • klebsiella pneumoniae (bacteria)
KeywordsISOMERASE / Xylose Isomerase / Glucose Isomerase / Humidity / Space group change / Unit cell change / time-resolved crystallography / Humidity serial measurement / LYASE / Trytophan Synthase / HYDROLASE / beta-lactamase / CTX-M-14

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