EMDB/PDB/SASBDBから引用されている文献のデータベース

キーワード
構造解析手法	All X線回折 NMR 電子顕微鏡小角散乱中性子線回折線維回折粉末回折赤外分光 EPR FRET 理論モデルハイブリッド
著者・登録者
ジャーナル
IF	>30 >20 >10 >5 all

タイトル	Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
ジャーナル・号・ページ	Nat Commun, Vol. 12, Issue 1, Page 7236, Year 2021
掲載日	2021年12月13日
著者	Christine E Carbone / Anna B Loveland / Howard B Gamper / Ya-Ming Hou / Gabriel Demo / Andrei A Korostelev /
PubMed 要旨	During translation, a conserved GTPase elongation factor-EF-G in bacteria or eEF2 in eukaryotes-translocates tRNA and mRNA through the ribosome. EF-G has been proposed to act as a flexible motor that ...During translation, a conserved GTPase elongation factor-EF-G in bacteria or eEF2 in eukaryotes-translocates tRNA and mRNA through the ribosome. EF-G has been proposed to act as a flexible motor that propels tRNA and mRNA movement, as a rigid pawl that biases unidirectional translocation resulting from ribosome rearrangements, or by various combinations of motor- and pawl-like mechanisms. Using time-resolved cryo-EM, we visualized GTP-catalyzed translocation without inhibitors, capturing elusive structures of ribosome•EF-G intermediates at near-atomic resolution. Prior to translocation, EF-G binds near peptidyl-tRNA, while the rotated 30S subunit stabilizes the EF-G GTPase center. Reverse 30S rotation releases Pi and translocates peptidyl-tRNA and EF-G by ~20 Å. An additional 4-Å translocation initiates EF-G dissociation from a transient ribosome state with highly swiveled 30S head. The structures visualize how nearly rigid EF-G rectifies inherent and spontaneous ribosomal dynamics into tRNA-mRNA translocation, whereas GTP hydrolysis and Pi release drive EF-G dissociation.
リンク	Nat Commun / PubMed:34903725 / PubMed Central
手法	EM (単粒子)
解像度	2.9 - 3.9 Å
構造データ	25405 7ss9 EMDB-25405, PDB-7ss9: Late translocation intermediate with EF-G partially dissociated (Structure V) 手法: EM (単粒子) / 解像度: 3.9 Å 25407 7ssd EMDB-25407, PDB-7ssd: Mid translocation intermediate with EF-G bound with GDP (Structure IV) 手法: EM (単粒子) / 解像度: 3.3 Å 25409 7ssl EMDB-25409, PDB-7ssl: Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) 手法: EM (単粒子) / 解像度: 3.8 Å 25410 7ssn EMDB-25410, PDB-7ssn: Pre translocation 70S ribosome with *A/P and P/E tRNA (Structure II-B) 手法: EM (単粒子) / 解像度: 3.2 Å 25411 7sso EMDB-25411, PDB-7sso: Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) 手法: EM (単粒子) / 解像度: 3.2 Å 25415 7ssw EMDB-25415, PDB-7ssw: Late translocation intermediate with EF-G dissociated (Structure VI) 手法: EM (単粒子) / 解像度: 3.8 Å 25418 7st2 EMDB-25418, PDB-7st2: Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) 手法: EM (単粒子) / 解像度: 2.9 Å 25420 7st6 EMDB-25420, PDB-7st6: Pre translocation, non-rotated 70S ribosome (Structure I) 手法: EM (単粒子) / 解像度: 3.0 Å 25421 7st7 EMDB-25421, PDB-7st7: Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) 手法: EM (単粒子) / 解像度**: 3.2 Å
化合物	ChemComp-GDP: GUANOSINE-5'-DIPHOSPHATE / GDP / GDP, エネルギー貯蔵分子YM / グアノシン二リン酸 ChemComp-PO4: PHOSPHATE ION / ホスファ-ト / リン酸塩 ChemComp-FME: N-FORMYLMETHIONINE / N-ホルミルメチオニン / N-ホルミルメチオニン ChemComp-PRO*: PROLINE / プロリン / プロリン
由来	escherichia coli k-12 (大腸菌) escherichia coli 113303 (大腸菌) streptomyces californicus (バクテリア)
キーワード	RIBOSOME (リボソーム) / EF-G (EF-G) / GTP / Translocation / GDP / Hybrid / Classical / RIBOSOME/ANTIBIOTIC / Ribosome-Antibiotic complex / Viomycin