Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Journal, issue, pages	Cell, Vol. 185, Issue 8, Page 1297-1307.e11, Year 2022
Publish date	Apr 14, 2022
Authors	Fengbin Wang / Virginija Cvirkaite-Krupovic / Matthijn Vos / Leticia C Beltran / Mark A B Kreutzberger / Jean-Marie Winter / Zhangli Su / Jun Liu / Stefan Schouten / Mart Krupovic / Edward H Egelman /
PubMed Abstract	Spindle- or lemon-shaped viruses infect archaea in diverse environments. Due to the highly pleomorphic nature of these virions, which can be found with cylindrical tails emanating from the spindle- ...Spindle- or lemon-shaped viruses infect archaea in diverse environments. Due to the highly pleomorphic nature of these virions, which can be found with cylindrical tails emanating from the spindle-shaped body, structural studies of these capsids have been challenging. We have determined the atomic structure of the capsid of Sulfolobus monocaudavirus 1, a virus that infects hosts living in nearly boiling acid. A highly hydrophobic protein, likely integrated into the host membrane before the virions assemble, forms 7 strands that slide past each other in both the tails and the spindle body. We observe the discrete steps that occur as the tail tubes expand, and these are due to highly conserved quasiequivalent interactions with neighboring subunits maintained despite significant diameter changes. Our results show how helical assemblies can vary their diameters, becoming nearly spherical to package a larger genome and suggest how all spindle-shaped viruses have evolved from archaeal rod-like viruses.
External links	Cell / PubMed:35325592 / PubMed Central
Methods	EM (helical sym.)
Resolution	3.7 - 6.3 Å
Structure data	24585 7ro2 EMDB-24585, PDB-7ro2: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 1 Method: EM (helical sym.) / Resolution: 5.1 Å 24586 7ro3 EMDB-24586, PDB-7ro3: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 2 Method: EM (helical sym.) / Resolution: 4.8 Å 24587 7ro4 EMDB-24587, PDB-7ro4: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 3 Method: EM (helical sym.) / Resolution: 4.3 Å 24588 7ro5 EMDB-24588, PDB-7ro5: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 4 Method: EM (helical sym.) / Resolution: 4.1 Å 24589 7ro6 EMDB-24589, PDB-7ro6: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 5 Method: EM (helical sym.) / Resolution: 4.1 Å 24590 7rob EMDB-24590, PDB-7rob: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6 Method: EM (helical sym.) / Resolution: 3.9 Å 24591 7roc EMDB-24591, PDB-7roc: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 7 Method: EM (helical sym.) / Resolution: 3.7 Å 24592 7rod EMDB-24592, PDB-7rod: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 8 Method: EM (helical sym.) / Resolution: 3.8 Å 24593 7roe EMDB-24593, PDB-7roe: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 9 Method: EM (helical sym.) / Resolution: 3.7 Å 24594 7rog EMDB-24594, PDB-7rog: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 10 Method: EM (helical sym.) / Resolution: 3.8 Å 24595 7roh EMDB-24595, PDB-7roh: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 11 Method: EM (helical sym.) / Resolution: 4.0 Å EMDB-24596: Cryo-EM reconstruction of Acidianus two-tailed virus, ATV Method: EM (helical sym.) / Resolution: 6.3 Å 24597 7roi EMDB-24597, PDB-7roi: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 12 Method: EM (helical sym.) / Resolution: 4.3 Å
Source	sulfolobus monocaudavirus smv1
Keywords	VIRUS / helical symmetry / archaeal virus / lemon-shaped virus / spindle-shaped virus