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Structure paper

TitleStructural and biochemical analysis of the metallo-beta-lactamase L1 from emerging pathogen Stenotrophomonas maltophilia revealed the subtle but distinct di-metal scaffold for catalytic activity.
Journal, issue, pagesProtein Sci., Vol. 29, Page 723-743, Year 2020
Publish dateAug 15, 2019 (structure data deposition date)
AuthorsKim, Y. / Maltseva, N. / Wilamowski, M. / Tesar, C. / Endres, M. / Joachimiak, A.
External linksProtein Sci. / PubMed:31846104
MethodsX-ray diffraction
Resolution1.4 - 2.38 Å
Structure data

PDB-6u0y:
Crystal Structure of the metallo-beta-lactamase L1 from Stenotrophomonas maltophilia
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-6u0z:
Crystal Structure of the metallo-beta-lactamase L1 from Stenotrophomonas maltophilia in the complex with the hydrolyzed penicillin G
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-6u10:
Crystal Structure of the metallo-beta-lactamase L1 from Stenotrophomonas maltophilia in the complex with the inhibitor captopril
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-6u13:
Crystal Structure of the metallo-beta-lactamase L1 from Stenotrophomonas maltophilia in the complex with the hydrolyzed antibiotic moxalactam
Method: X-RAY DIFFRACTION / Resolution: 1.52 Å

PDB-6u2z:
Crystal Structure of the metallo-beta-lactamase L1 from Stenotrophomonas maltophilia in the complex with the hydrolyzed moxalactam and two copper ions
Method: X-RAY DIFFRACTION / Resolution: 2.38 Å

PDB-6u9c:
The 2.2 A Crystal Structure of the Type B Chloramphenicol Acetyltransferase from Vibrio cholerae in the complex with Acetyl CoA
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-6ua1:
Crystal Structure of the metallo-beta-lactamase L1 from Stenotrophomonas maltophilia in the no-metal bound form
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6uac:
Crystal Structure of the metallo-beta-lactamase L1 from Stenotrophomonas maltophilia in the complex with cadmium and hydrolyzed moxolactam
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-6uaf:
Crystal Structure of the Metallo-beta-lactamase L1 from Stenotrophomonas maltophilia in the Complex with Hydrolyzed Imipnem
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-6uah:
Crystal Structure of the Metallo-beta-Lactamase L1 from Stenotrophomonas maltophilia in the Complex with Hydrolyzed Meropenem
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PNK:
(2R,4S)-2-{(R)-carboxy[(phenylacetyl)amino]methyl}-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid

ChemComp-X8Z:
L-CAPTOPRIL / inhibitor, medication*YM

ChemComp-FMT:
FORMIC ACID

ChemComp-MX1:
(2R)-2-((R)-CARBOXY{[CARBOXY(4-HYDROXYPHENYL)ACETYL]AMINO}METHOXYMETHYL)-5-METHYLENE-5,6-DIHYDRO-2H-1,3-OXAZINE-4-CARBO

ChemComp-3P7:
(2R)-2-[(1R)-1-{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}-1-methoxy-2-oxoethyl]-5-methylidene-5,6-dihydro-2H-1,3

ChemComp-CU:
COPPER (II) ION

ChemComp-CIT:
CITRIC ACID

ChemComp-CL:
Unknown entry

ChemComp-ACO:
ACETYL COENZYME *A

ChemComp-IPA:
ISOPROPYL ALCOHOL / alkaloid*YM

ChemComp-CD:
Unknown entry

ChemComp-HIW:
(2R,4S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-[(2-{[(Z)-iminomethyl]amino}ethyl)sulfanyl]-3,4-dihydro-2H-pyrrole-5-ca

ChemComp-LMP:
(2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy

ChemComp-PGE:
TRIETHYLENE GLYCOL

Source
  • stenotrophomonas maltophilia (strain k279a) (bacteria)
  • vibrio cholerae serotype o1 (strain atcc 39315 / el tor inaba n16961) (bacteria)
KeywordsHYDROLASE / lactam antibiotics / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID / penicillin G / metallo-beta-lactamases / moxalactam / TRANSFERASE / left-handed beta helix / hexapeptide repeats / carbapenem

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