Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Journal, issue, pages	Proc. Natl. Acad. Sci. USA, Vol. 117, Page 5801-5809, Year 2020
Publish date	Aug 12, 2019 (structure data deposition date)
Authors	Li, L. / Molodtsov, V. / Lin, W. / Ebright, R.H. / Zhang, Y.
External links	Proc. Natl. Acad. Sci. USA / PubMed:32127479
Methods	X-ray diffraction
Resolution	2.45 - 3.8 Å
Structure data	PDB-6kon: Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 5 nt Method: X-RAY DIFFRACTION / Resolution: 3 Å PDB-6koo: Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 7 nt Method: X-RAY DIFFRACTION / Resolution: 2.8 Å PDB-6kop: Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 9 nt Method: X-RAY DIFFRACTION / Resolution: 3.303 Å PDB-6koq: Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 10 nt Method: X-RAY DIFFRACTION / Resolution: 3.353 Å PDB-6kqd: Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 3 nt Method: X-RAY DIFFRACTION / Resolution: 3.3 Å PDB-6kqe: Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 4 nt Method: X-RAY DIFFRACTION / Resolution: 3.3 Å PDB-6kqf: Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 5 nt Method: X-RAY DIFFRACTION / Resolution: 2.45 Å PDB-6kqg: Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 6 nt Method: X-RAY DIFFRACTION / Resolution: 2.783 Å PDB-6kqh: Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 7 nt Method: X-RAY DIFFRACTION / Resolution: 3.18 Å PDB-6kql: Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 4 nt Method: X-RAY DIFFRACTION / Resolution: 2.89 Å PDB-6kqm: Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 5 nt Method: X-RAY DIFFRACTION / Resolution: 3.197 Å PDB-6kqn: Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 6 nt Method: X-RAY DIFFRACTION / Resolution: 3.489 Å PDB-6l74: Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 2 nt Method: X-RAY DIFFRACTION / Resolution: 3.12 Å PDB-6lts: Crystal structure of Thermus thermophilus transcription initiation complex comprising a truncated sigma finger Method: X-RAY DIFFRACTION / Resolution: 3.45 Å PDB-6tye: Crystal structure of MTB sigma L transcription initiation complex with 5 nt long RNA primer Method: X-RAY DIFFRACTION / Resolution: 3.79 Å PDB-6tyf: Crystal structure of MTB sigma L transcription initiation complex with 6 nt long RNA primer Method: X-RAY DIFFRACTION / Resolution: 3.8 Å PDB-6tyg: Crystal structure of MTB sigma L transcription initiation complex with 9 nt long RNA primer Method: X-RAY DIFFRACTION / Resolution: 3.5 Å
Chemicals	ChemComp-ZN: Unknown entry ChemComp-MG: Unknown entry ChemComp-HOH: WATER ChemComp-DGP: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
Source	mycobacterium tuberculosis h37rv (bacteria) synthetic construct (others) mycobacterium tuberculosis (strain atcc 25618 / h37rv) (bacteria) thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (bacteria) thermus thermophilus hb8 (bacteria) thermus thermophilus (bacteria) mycobacterium tuberculosis (bacteria)
Keywords	TRANSCRIPTION / Mycobacterium tuberculosis / RNA polymerase / ECF sigma factor sigH / 7nt RNA / ECF sigma factor / 9nt RNA / Thermus thermophilus / initiation transcription complex / 3nt RNA / TRANSLATION / transcription initiation / 4nt RNA / transcription initiation complex / 5nt RNA / 6nt RNA / 5'-triphosphate / 5'-triphosphate 5nt RNA / 5'-triphosphate 6nt RNA / 2nt RNA / sigma factor / bacterial transcription / initiation factor / sigma finger / tuberculosis / initiation / sigma finger displacement