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Structure paper

TitlePMP-diketopiperazine adducts form at the active site of a PLP dependent enzyme involved in formycin biosynthesis.
Journal, issue, pagesChem. Commun. (Camb. ), Vol. 55, Page 14502-14505, Year 2019
Publish dateSep 6, 2019 (structure data deposition date)
AuthorsGao, S. / Liu, H. / de Crecy-Lagard, V. / Zhu, W. / Richards, N.G.J. / Naismith, J.H.
External linksChem. Commun. (Camb. ) / PubMed:31730149
MethodsX-ray diffraction
Resolution1.18 - 1.56 Å
Structure data

PDB-6ssd:
Transaminase with PLP bound
Method: X-RAY DIFFRACTION / Resolution: 1.18 Å

PDB-6sse:
Transaminase with PMP bound
Method: X-RAY DIFFRACTION / Resolution: 1.56 Å

PDB-6ssf:
Transaminase with LCS bound
Method: X-RAY DIFFRACTION / Resolution: 1.48 Å

PDB-6ssg:
Transaminase with DCS bound
Method: X-RAY DIFFRACTION / Resolution: 1.47 Å

Chemicals

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-PMP:
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE

ChemComp-LUH:
[4-[(~{Z})-[(2~{S},5~{S})-5-(azanyloxymethyl)-3,6-bis(oxidanylidene)piperazin-2-yl]methoxyiminomethyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate

ChemComp-LUK:
[4-[(~{Z})-[(2~{R},5~{R})-5-(azanyloxymethyl)-3,6-bis(oxidanylidene)piperazin-2-yl]methoxyiminomethyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate

Source
  • streptomyces kaniharaensis (bacteria)
KeywordsTRANSFERASE / PLP bound / PMP bound / LCS bound / DCS bound

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