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Structure paper

TitleThe multifunctional globin dehaloperoxidase strikes again: Simultaneous peroxidase and peroxygenase mechanisms in the oxidation of EPA pollutants.
Journal, issue, pagesArch. Biochem. Biophys., Vol. 673, Page 108079-108079, Year 2019
Publish dateApr 22, 2019 (structure data deposition date)
AuthorsMalewschik, T. / de Serrano, V. / McGuire, A.H. / Ghiladi, R.A.
External linksArch. Biochem. Biophys. / PubMed:31445024
MethodsX-ray diffraction
Resolution1.35 - 2.1 Å
Structure data

PDB-6ong:
Dehaloperoxidate B in complex with substrate 4-F-cresol
Method: X-RAY DIFFRACTION / Resolution: 1.42 Å

PDB-6onk:
Dehaloperoxidase B in complex with substrate 4-Cl-cresol
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6onr:
Dehaloperoxidase B in complex with substrate 4-methyl-cresol
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-6onx:
Dehaloperoxidase B in complex with substrate 4-Br-cresol
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-6onz:
Dehaloperoxidase B in complex with substtrate 4-nitro-cresol
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6oo1:
Dehaloperoxidase B in complex with substrate o-cresol
Method: X-RAY DIFFRACTION / Resolution: 1.602 Å

PDB-6oo6:
Dehaloperoxidase B in complex with substrate p-cresol
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-6oo8:
Dehaloperoxidase B in complex with substrate pentachlorophenol
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-MWM:
4-fluoro-2-methylphenol

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-MZG:
4-chloro-2-methylphenol

ChemComp-N0D:
2,4-dimethylphenol

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-MWJ:
4-bromo-2-methylphenol

ChemComp-MYJ:
2-methyl-4-nitrophenol

ChemComp-JZ0:
o-cresol

ChemComp-PCR:
P-CRESOL

ChemComp-PCI:
PENTACHLOROPHENOL

Source
  • amphitrite ornata (invertebrata)
KeywordsOXIDOREDUCTASE / peroxidase activity / oxygen binding / heme cofactor / heme peroxidase / peroxygenase / heme peroxydase

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