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Structure paper

TitleBump-and-Hole Engineering Identifies Specific Substrates of Glycosyltransferases in Living Cells.
Journal, issue, pagesMol. Cell, Vol. 78, Page 824-834.e15, Year 2020
Publish dateJul 26, 2018 (structure data deposition date)
AuthorsSchumann, B. / Malaker, S.A. / Wisnovsky, S.P. / Debets, M.F. / Agbay, A.J. / Fernandez, D. / Wagner, L.J.S. / Lin, L. / Li, Z. / Choi, J. ...Schumann, B. / Malaker, S.A. / Wisnovsky, S.P. / Debets, M.F. / Agbay, A.J. / Fernandez, D. / Wagner, L.J.S. / Lin, L. / Li, Z. / Choi, J. / Fox, D.M. / Peh, J. / Gray, M.A. / Pedram, K. / Kohler, J.J. / Mrksich, M. / Bertozzi, C.R.
External linksMol. Cell / PubMed:32325029
MethodsX-ray diffraction
Resolution1.8 - 3.05 Å
Structure data

PDB-6e7i:
Human ppGalNAcT2 I253A/L310A Mutant with EA2 and UDP
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6nqt:
GalNac-T2 soaked with UDP-sugar
Method: X-RAY DIFFRACTION / Resolution: 3.05 Å

Chemicals

ChemComp-UDP:
URIDINE-5'-DIPHOSPHATE / UDP*YM

ChemComp-MN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-LR7:
[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{R})-3-(hex-5-ynoylamino)-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] hydrogen phosphate

Source
  • homo sapiens (human)
  • rattus norvegicus (Norway rat)
KeywordsTRANSFERASE / glycosyltransferase / glycosylation / bump-hole / galnac / TRANSFERASE/TRANSFERASE INHIBITOR / Inhibitor / Complex / TRANSFERASE-TRANSFERASE INHIBITOR complex

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