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Structure paper

TitleCrystallographic investigation of the ubiquinone binding site of respiratory Complex II and its inhibitors.
Journal, issue, pagesBiochim Biophys Acta Proteins Proteom, Vol. 1869, Page 140679-140679, Year 2021
Publish dateNov 2, 2018 (structure data deposition date)
AuthorsHuang, L.S. / Lummen, P. / Berry, E.A.
External linksBiochim Biophys Acta Proteins Proteom / PubMed:34089891
MethodsX-ray diffraction
Resolution1.97 - 2.37 Å
Structure data

PDB-6myo:
Avian mitochondrial complex II with flutolanyl bound
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-6myp:
Avian mitochondrial complex II with TTFA (thenoyltrifluoroacetone) bound
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-6myq:
Avian mitochondrial complex II with ferulenol bound
Method: X-RAY DIFFRACTION / Resolution: 1.97 Å

PDB-6myr:
Avian mitochondrial complex II with thiapronil bound
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-6mys:
Avian mitochondrial complex II with Atpenin A5 bound, sidechain outside
Method: X-RAY DIFFRACTION / Resolution: 2.37 Å

PDB-6myt:
Avian mitochondrial complex II with Atpenin A5 bound, sidechain in pocket
Method: X-RAY DIFFRACTION / Resolution: 2.27 Å

PDB-6myu:
Avian mitochondrial complex II crystallized in the presence of HQNO
Method: X-RAY DIFFRACTION / Resolution: 1.97 Å

Chemicals

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-OAA:
OXALOACETATE ION

ChemComp-K:
Unknown entry

ChemComp-MN:
Unknown entry

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER


ChemComp, No image

ChemComp-UNL:
Unknown ligand

ChemComp-FES:
FE2/S2 (INORGANIC) CLUSTER

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-F3S:
FE3-S4 CLUSTER

ChemComp-FTN:
N-[3-(1-methylethoxy)phenyl]-2-(trifluoromethyl)benzamide

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-UMQ:
UNDECYL-MALTOSIDE / detergent*YM

ChemComp-3PE:
1,2-Distearoyl-sn-glycerophosphoethanolamine / phospholipid*YM

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-BCT:
BICARBONATE ION / pH buffer*YM

ChemComp-TTF:
4,4,4-TRIFLUORO-1-THIEN-2-YLBUTANE-1,3-DIONE / inhibitor*YM

ChemComp-Y3P:
(~{Z})-2-oxidanylbut-2-enedioic acid

ChemComp-MOH:
METHANOL

ChemComp-9AU:
4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one

ChemComp-K7G:
thiapronil

ChemComp-BOG:
octyl beta-D-glucopyranoside / detergent*YM

ChemComp-AT5:
3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4-HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE

Source
  • gallus gallus (chicken)
KeywordsOXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR / Complex II / membrane protein / heme protein / OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex

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