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Structure paper

TitleVisualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 139, Page 13830-13836, Year 2017
Publish dateAug 8, 2017 (structure data deposition date)
AuthorsMitchell, A.J. / Dunham, N.P. / Martinie, R.J. / Bergman, J.A. / Pollock, C.J. / Hu, K. / Allen, B.D. / Chang, W.C. / Silakov, A. / Bollinger, J.M. ...Mitchell, A.J. / Dunham, N.P. / Martinie, R.J. / Bergman, J.A. / Pollock, C.J. / Hu, K. / Allen, B.D. / Chang, W.C. / Silakov, A. / Bollinger, J.M. / Krebs, C. / Boal, A.K.
External linksJ. Am. Chem. Soc. / PubMed:28823155
MethodsX-ray diffraction
Resolution1.55 - 1.99 Å
Structure data

PDB-6alm:
VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and 2-OXO-GLUTARIC ACID
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-6aln:
VioC L-arginine hydroxylase bound to Fe(II), 3S-hydroxy-L-arginine, and 2OG
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6alo:
VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and a peroxysuccinate intermediate
Method: X-RAY DIFFRACTION / Resolution: 1.79 Å

PDB-6alp:
VioC L-arginine hydroxylase bound to Fe(II), 3S-hydroxy-L-arginine, and succinate
Method: X-RAY DIFFRACTION / Resolution: 1.99 Å

PDB-6alq:
VioC L-arginine hydroxylase bound to Fe(II), L-arginine, and succinate
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-6alr:
VioC L-arginine hydroxylase bound to the vanadyl ion, L-arginine, and succinate
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

Chemicals

ChemComp-FE2:
Unknown entry

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-ARG:
ARGININE

ChemComp-HOH:
WATER

ChemComp-ZZU:
(2S,3S)-3-HYDROXYARGININE

ChemComp-OKG:
4-peroxy-4-oxobutanoic acid

ChemComp-SIN:
SUCCINIC ACID

ChemComp-VVO:
oxovanadium(2+)

Source
  • streptomyces vinaceus (bacteria)
KeywordsOXIDOREDUCTASE / hydroxylase / 2-oxo-glutarate / iron / vanadyl ion

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