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Structure paper

TitleStructural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands.
Journal, issue, pagesCell Rep, Vol. 25, Page 3371-3381.e5, Year 2018
Publish dateApr 28, 2018 (structure data deposition date)
AuthorsZhang, Z. / Ohto, U. / Shibata, T. / Taoka, M. / Yamauchi, Y. / Sato, R. / Shukla, N.M. / David, S.A. / Isobe, T. / Miyake, K. / Shimizu, T.
External linksCell Rep / PubMed:30566863
MethodsX-ray diffraction
Resolution2 - 2.7 Å
Structure data

PDB-5zsa:
Crystal structure of monkey TLR7 in complex with IMDQ and UUUUUU
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-5zsb:
Crystal structure of monkey TLR7 in complex with IMDQ and AAUUAA
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-5zsc:
Crystal structure of monkey TLR7 in complex with IMDQ and CCUUCC
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5zsd:
Crystal structure of monkey TLR7 in complex with IMDQ and GGUUGG
Method: X-RAY DIFFRACTION / Resolution: 2.603 Å

PDB-5zse:
Crystal structure of monkey TLR7 in complex with IMDQ and GGUCCC
Method: X-RAY DIFFRACTION / Resolution: 2.201 Å

PDB-5zsf:
Crystal structure of monkey TLR7 in complex with imiquimod
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5zsg:
Crystal structure of monkey TLR7 in complex with gardiquimod
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-5zsh:
Crystal structure of monkey TLR7 in complex with CL075
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-5zsi:
Crystal structure of monkey TLR7 in complex with CL097
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-5zsj:
Crystal structure of monkey TLR7 in complex with GS9620
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5zsl:
Crystal structure of monkey TLR7 in complex with GGUUGG
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-5zsm:
Crystal structure of monkey TLR7 in complex with GGUCCC
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-5zsn:
Crystal structure of monkey TLR7 in complex with AAUUAA
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-6if5:
Crystal structure of monkey TLR7 in complex with 2',3'-cGMP (Guanosine 2',3'-cyclic phosphate)
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-IDQ:
1-[[4-(aminomethyl)phenyl]methyl]-2-butyl-imidazo[4,5-c]quinolin-4-amine

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-6T0:
1-(2-methylpropyl)imidazo[4,5-c]quinolin-4-amine / medication*YM

ChemComp-9K3:
1-{4-amino-2-[(ethylamino)methyl]-1H-imidazo[4,5-c]quinolin-1-yl}-2-methylpropan-2-ol

ChemComp-L07:
2-propyl[1,3]thiazolo[4,5-c]quinolin-4-amine

ChemComp-C09:
2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-4-amine

ChemComp-9JR:
4-azanyl-2-butoxy-8-[[3-(pyrrolidin-1-ylmethyl)phenyl]methyl]-5,7-dihydropteridin-6-one

ChemComp-9K9:
2-amino-9-[(2S,3aR,4R,6R,6aR)-2-hydroxy-6-(hydroxymethyl)-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]-3,9-dihydro-6H-purin-6-one

ChemComp-PO4:
PHOSPHATE ION

ChemComp-ACK:
2',3'- cyclic AMP

ChemComp-23G:
GUANOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE

Source
  • macaca mulatta (Rhesus monkey)
  • synthetic construct (others)
KeywordsIMMUNE SYSTEM / Innate immunity Toll-like receptors

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