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Structure paper

TitleStructural insights into the catalytic mechanism of cysteine (hydroxyl) lyase from the hydrogen sulfide-producing oral pathogen,Fusobacterium nucleatum.
Journal, issue, pagesBiochem. J., Vol. 475, Page 733-748, Year 2018
Publish dateApr 22, 2016 (structure data deposition date)
AuthorsKezuka, Y. / Ishida, T. / Yoshida, Y. / Nonaka, T.
External linksBiochem. J. / PubMed:29343611
MethodsX-ray diffraction
Resolution2.07 - 2.14 Å
Structure data

PDB-5b55:
Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) D232N mutant in complexed with alpha-aminoacrylate intermediate: lysine-dimethylated form
Method: X-RAY DIFFRACTION / Resolution: 2.14 Å

PDB-5z5c:
Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) from Fusobacterium nucleatum: lysine-dimethylated form
Method: X-RAY DIFFRACTION / Resolution: 2.07 Å

Chemicals

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE

ChemComp-0JO:
2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-CL:
Unknown entry

Source
  • fusobacterium nucleatum subsp. nucleatum strain atcc 25586 (bacteria)
  • fusobacterium nucleatum subsp. nucleatum (strain atcc 25586 / cip 101130 / jcm 8532 / lmg 13131) (bacteria)
KeywordsTRANSFERASE / Pyridoxal 5'-phosphate dependent enzyme / alpha-Aminoacrylate / Internal aldimine

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