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Structure paper

TitleStructural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Journal, issue, pagesNucleic Acids Res., Vol. 46, Page 42-53, Year 2018
Publish dateJul 4, 2017 (structure data deposition date)
AuthorsPadroni, G. / Parkinson, J.A. / Fox, K.R. / Burley, G.A.
External linksNucleic Acids Res. / PubMed:29194552
MethodsNMR (solution)
Structure data

PDB-5ocz:
Free DNA_hairpin polyamides studies
Method: SOLUTION NMR

PDB-5odf:
NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies
Method: SOLUTION NMR

PDB-5odm:
NtiPr polyamide in complex with 5'CGATGTACTACG3
Method: SOLUTION NMR

PDB-5oe1:
Im polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies
Method: SOLUTION NMR

Chemicals

ChemComp-CWN:
NtMe polyamide

ChemComp-9U2:
5-propan-2-yl-1,3-thiazole-4-carbaldehyde

ChemComp-PYB:
4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID

ChemComp-ABU:
GAMMA-AMINO-BUTANOIC ACID / neurotransmitter, inhibitor*YM

ChemComp-IMT:
4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID

ChemComp-9T8:
3-(3-azaniumylpropanoylamino)propyl-dimethyl-azanium

ChemComp-9TK:
1-methylimidazole-2-carboxylic acid

Source
  • synthetic construct (others)
  • homo sapiens (human)
KeywordsDNA / DNA free- minor groove binders- polyamides / DNA BINDING PROTEIN / Minor groove binders / Hairpin polyamides / minor groove binders- hairpin polyamides / hairpin poyamides

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