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Structure paper

Titlevan der Waals Contact between Nucleophile and Transferring Phosphorus Is Insufficient To Achieve Enzyme Transition-State Architecture
Journal, issue, pagesAcs Catalysis, Year 2018
Publish dateJun 7, 2017 (structure data deposition date)
AuthorsJohnson, L.A. / Robertson, A.J. / Baxter, N.J. / Trevitt, C.R. / Bisson, C. / Jin, Y. / Wood, H.P. / Hounslow, A.M. / Cliff, M.J. / Blackburn, G.M. ...Johnson, L.A. / Robertson, A.J. / Baxter, N.J. / Trevitt, C.R. / Bisson, C. / Jin, Y. / Wood, H.P. / Hounslow, A.M. / Cliff, M.J. / Blackburn, G.M. / Bowler, M.W. / Waltho, J.P.
External linksAcs Catalysis / Search PubMed
MethodsX-ray diffraction
Resolution1.1 - 2.2 Å
Structure data

PDB-5o6p:
Structure of beta-phosphoglucomutase D10N mutant in complex with glucose-1,6-bisphosphate
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5o6r:
Structure of beta-phosphoglucomutase D10N mutant in complex with glucose-1-phosphate and aluminium tetrafluoride
Method: X-RAY DIFFRACTION / Resolution: 1.36 Å

PDB-5ojz:
D10N variant of beta-phosphoglucomutase from Lactococcus lactis inhibited by a beryllium triflouride phosphoenzyme analogue to 1.3A resolution.
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-5ok0:
Structure of the D10N mutant of beta-phosphoglucomutase from Lactococcus lactis trapped with native reaction intermediate beta-glucose 1,6-bisphosphate to 2.2A resolution.
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-5ok1:
D10N variant of beta-phosphoglucomutase from Lactococcus lactis trapped with native beta-glucose 1,6-bisphosphate intermediate to 1.9A resolution.
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-5ok2:
Structure of the D10N mutant of beta-phosphoglucomutase from Lactococcus lactis inhibited with glucose 6-phosphate and tetrafluoroaluminate to 1.1A resolution.
Method: X-RAY DIFFRACTION / Resolution: 1.1 Å

Chemicals

ChemComp-B16:
1,6-di-O-phosphono-beta-D-glucopyranose

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-XGP:
1-O-phosphono-beta-D-glucopyranose

ChemComp-ALF:
TETRAFLUOROALUMINATE ION

ChemComp-BEF:
BERYLLIUM TRIFLUORIDE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PDO:
1,3-PROPANDIOL

ChemComp-NA:
Unknown entry

ChemComp-BG6:
6-O-phosphono-beta-D-glucopyranose

Source
  • lactococcus lactis (lactic acid bacteria)
  • lactococcus lactis subsp. lactis il1403 (lactic acid bacteria)
KeywordsISOMERASE / phosphoryl transfer / catalysis / near attack complex / SUGAR BINDING PROTEIN / phosphoglucomutase / phosphoenzyme analogue / bisphospho-intermediate / transition-state analogue / general acid-base catalysis

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