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Structure paper

TitleStructural Snapshots for Mechanism-Based Inactivation of a Glycoside Hydrolase by Cyclopropyl Carbasugars.
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 55, Page 14978-14982, Year 2016
Publish dateOct 6, 2016 (structure data deposition date)
AuthorsAdamson, C. / Pengelly, R.J. / Shamsi Kazem Abadi, S. / Chakladar, S. / Draper, J. / Britton, R. / Gloster, T.M. / Bennet, A.J.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:27783466
MethodsX-ray diffraction
Resolution1.53 - 1.8 Å
Structure data

PDB-5m0x:
Structure of apo structure of GH36 alpha-galactosidase from Thermotoga maritima
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-5m12:
Structure of GH36 alpha-galactosidase from Thermotoga maritima in complex with intact cyclopropyl-carbasugar.
Method: X-RAY DIFFRACTION / Resolution: 1.53 Å

PDB-5m16:
Structure of GH36 alpha-galactosidase from Thermotoga maritima in complex with a hydrolysed cyclopropyl carbasugar.
Method: X-RAY DIFFRACTION / Resolution: 1.62 Å

PDB-5m1i:
Structure of GH36 alpha-galactosidase from Thermotoga maritima in a covalent complex with a cyclopropyl carbasugar.
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-7D0:
(1~{R},2~{S},3~{S},4~{R},5~{S},6~{S})-5-[3,5-bis(fluoranyl)phenoxy]-1-(hydroxymethyl)bicyclo[4.1.0]heptane-2,3,4-triol

ChemComp-7D2:
(1~{R},2~{S},3~{S},4~{S},5~{S},6~{S})-1-(hydroxymethyl)bicyclo[4.1.0]heptane-2,3,4,5-tetrol

ChemComp-7D8:
(1~{R},2~{S},3~{S},4~{S},6~{R})-4-fluoranyl-1-(hydroxymethyl)bicyclo[4.1.0]heptane-2,3-diol

ChemComp-EDO:
1,2-ETHANEDIOL

Source
  • thermotoga maritima (bacteria)
KeywordsHYDROLASE / Alpha-galactosidase / glycoside hydrolase

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