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Structure paper

TitleStructural and functional analysis ofOceanobacillus iheyensismacrodomain reveals a network of waters involved in substrate binding and catalysis.
Journal, issue, pagesOpen Biol, Vol. 7, Year 2017
Publish dateJan 25, 2016 (structure data deposition date)
AuthorsZapata-Perez, R. / Gil-Ortiz, F. / Martinez-Monino, A.B. / Garcia-Saura, A.G. / Juanhuix, J. / Sanchez-Ferrer, A.
External linksOpen Biol / PubMed:28446708
MethodsX-ray diffraction
Resolution1.35 - 2 Å
Structure data

PDB-5fud:
Oceanobacillus iheyensis macrodomain with MES bound
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5l9k:
OCEANOBACILLUS IHEYENSIS MACRODOMAIN WITH ADPR
Method: X-RAY DIFFRACTION / Resolution: 1.77 Å

PDB-5l9q:
OCEANOBACILLUS IHEYENSIS MACRODOMAIN WITH ADP
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-5lau:
Oceanobacillus iheyensis macrodomain mutant G37V with ADPR
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-5lbp:
Oceanobacillus iheyensis macrodomain mutant N30A
Method: X-RAY DIFFRACTION / Resolution: 1.76 Å

PDB-5lcc:
Oceanobacillus iheyensis macrodomain mutant D40A
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-CL:
Unknown entry

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-AR6:
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL

ChemComp-GOL:
GLYCEROL

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-PO4:
PHOSPHATE ION

Source
  • oceanobacillus iheyensis (bacteria)
  • oceanobacillus iheyensis (strain dsm 14371 / cip 107618 / jcm 11309 / kctc 3954 / hte831) (bacteria)
  • oceanobacillus iheyensis (strain dsm 14371 / jcm 11309 / kctc 3954 / hte831) (bacteria)
KeywordsHYDROLASE / BACTERIAL MACRODOMAIN / ADP-RIBOSE / DEACETYLASE / macrodomain / ADP-ribosylation

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