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Structure paper

TitleStructural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation.
Journal, issue, pagesChem. Commun. (Camb. ), Vol. 52, Page 11096-11099, Year 2016
Publish dateJun 3, 2016 (structure data deposition date)
AuthorsRoth, C. / Petricevic, M. / John, A. / Goddard-Borger, E.D. / Davies, G.J. / Williams, S.J.
External linksChem. Commun. (Camb. ) / PubMed:27546776
MethodsX-ray diffraction
Resolution1.85 - 2.3 Å
Structure data

PDB-5l7r:
Crystal structure of BvGH123
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5l7u:
Crystal structure of BvGH123 with bound GalNAc
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5l7v:
Crystal Structure of BvGH123 with bond transition state analog Galthiazoline.
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-NGA:
2-acetamido-2-deoxy-beta-D-galactopyranose

ChemComp-CL:
Unknown entry

ChemComp-GNL:
(3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol

Source
  • bacteroides vulgatus (strain atcc 8482 / dsm 1447 / jcm 5826 / nbrc 14291 / nctc 11154) (bacteria)
  • bacteroides vulgatus (bacteria)
KeywordsHYDROLASE / TIM barrel / BACON

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