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Structure paper

TitleStructural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
Journal, issue, pagesOpen Biology, Vol. 6, Year 2016
Publish dateMay 3, 2016 (structure data deposition date)
AuthorsHemsworth, G.R. / Thompson, A.J. / Stepper, J. / Sobala, F. / Coyle, T. / Larsbrink, J. / Spadiut, O. / Goddard-Borger, E.D. / Stubbs, K.A. / Brumer, H. / Davies, G.J.
External linksOpen Biology / PubMed:27466444
MethodsX-ray diffraction
Resolution1.5 - 2.3 Å
Structure data

PDB-5jou:
Bacteroides ovatus Xyloglucan PUL GH31
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-5jov:
Bacteroides ovatus Xyloglucan PUL GH31 with bound 5FIdoF
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-5jow:
Bacteroides ovatus Xyloglucan PUL GH43A
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-5jox:
Bacteroides ovatus Xyloglucan PUL GH43A in complex with AraDNJ
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-5joy:
Bacteroides ovatus Xyloglucan PUL GH43A in complex with AraLOG
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5joz:
Bacteroides ovatus Xyloglucan PUL GH43B
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-5jp0:
Bacteroides ovatus Xyloglucan PUL GH3B with bound glucose
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-NI:
NICKEL (II) ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-B9D:
5-fluoro-alpha-L-idopyranose

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-EDG:
1,4-DIDEOXY-1,4-IMINO-L-ARABINITOL

ChemComp-6LW:
(Z)-L-Arabinonhydroximo-1,4-lactone

ChemComp-CA:
Unknown entry

ChemComp-BGC:
beta-D-glucopyranose

ChemComp-MG:
Unknown entry

Source
  • bacteroides ovatus (bacteria)
KeywordsHYDROLASE / Glycoside hydrolase / GH31 / GH43 / GH3

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