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Structure paper

TitleMetal-Dependent Function of a Mammalian Acireductone Dioxygenase.
Journal, issue, pagesBiochemistry, Vol. 55, Page 1398-1407, Year 2016
Publish dateFeb 19, 2016 (structure data deposition date)
AuthorsDeshpande, A.R. / Wagenpfeil, K. / Pochapsky, T.C. / Petsko, G.A. / Ringe, D.
External linksBiochemistry / PubMed:26858196
MethodsX-ray diffraction
Resolution1.751 - 2.236 Å
Structure data

PDB-5i8s:
Structure of Mouse Acireductone dioxygenase with Ni2+ ion and pentanoic acid in the active site
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

PDB-5i8t:
Structure of Mouse Acireductone dioxygenase with Ni2+ ion and D-lactic acid in the active site
Method: X-RAY DIFFRACTION / Resolution: 1.751 Å

PDB-5i8y:
Structure of Mouse Acireductone Dioxygenase bound to Co2+ and 2-keto-4-(methylthio)-butyric acid
Method: X-RAY DIFFRACTION / Resolution: 1.942 Å

PDB-5i91:
Structure of Mouse Acirecutone dioxygenase with to Ni2+ and 2-keto-4-(methylthio)-butyric acid in the active site
Method: X-RAY DIFFRACTION / Resolution: 1.76 Å

PDB-5i93:
Structure of Mouse Acireductone dioxygenase with Ni2+ and 2-ketopentanoic acid in the active site
Method: X-RAY DIFFRACTION / Resolution: 2.236 Å

Chemicals

ChemComp-NI:
NICKEL (II) ION

ChemComp-LEA:
PENTANOIC ACID

ChemComp-HOH:
WATER

ChemComp-LAC:
LACTIC ACID

ChemComp-IPA:
ISOPROPYL ALCOHOL / alkaloid*YM

ChemComp-CO:
Unknown entry

ChemComp-KMT:
4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID

ChemComp-69O:
2-oxopentanoic acid

Source
  • mus musculus (house mouse)
KeywordsOXIDOREDUCTASE / Product analog / off-pathway chemistry / Substrate analog / D-lactic acid / 2-keto-4-(methylthio)-butyric acid / 2-oxovaleric acid

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