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TitleA Camelid-derived Antibody Fragment Targeting the Active Site of a Serine Protease Balances between Inhibitor and Substrate Behavior.
Journal, issue, pagesJ. Biol. Chem., Vol. 291, Page 15156-15168, Year 2016
Publish dateJan 5, 2016 (structure data deposition date)
AuthorsKromann-Hansen, T. / Oldenburg, E. / Yung, K.W. / Ghassabeh, G.H. / Muyldermans, S. / Declerck, P.J. / Huang, M. / Andreasen, P.A. / Ngo, J.C.
External linksJ. Biol. Chem. / PubMed:27226628
MethodsX-ray diffraction
Resolution1.97 - 2.16 Å
Structure data

PDB-5hdo:
Crystal structure of a nanobody raised against urokinase-type plasminogen activator
Method: X-RAY DIFFRACTION / Resolution: 2.16 Å

PDB-5hgg:
Crystal structure of uPA in complex with a camelid-derived antibody fragment
Method: X-RAY DIFFRACTION / Resolution: 1.97 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-TWN:
(3S)-3-[(2S,3S,4R)-3,4-DIMETHYLTETRAHYDROFURAN-2-YL]BUTYL LAURATE

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

Source
  • camelus dromedarius (Arabian camel)
  • homo sapiens (human)
  • vicugna pacos (alpaca)
KeywordsIMMUNE SYSTEM / HYDROLASE/INHIBITOR / uPA / Nanobody / Serine Protease / HYDROLASE-INHIBITOR complex

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