[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

+
Search query

Keywords
Structure methods
Author
Journal
IF

-
Structure paper

TitlePredictive features of ligand-specific signaling through the estrogen receptor.
Journal, issue, pagesMol. Syst. Biol., Vol. 12, Page 864-864, Year 2016
Publish dateMay 4, 2015 (structure data deposition date)
AuthorsNwachukwu, J.C. / Srinivasan, S. / Zheng, Y. / Wang, S. / Min, J. / Dong, C. / Liao, Z. / Nowak, J. / Wright, N.J. / Houtman, R. ...Nwachukwu, J.C. / Srinivasan, S. / Zheng, Y. / Wang, S. / Min, J. / Dong, C. / Liao, Z. / Nowak, J. / Wright, N.J. / Houtman, R. / Carlson, K.E. / Josan, J.S. / Elemento, O. / Katzenellenbogen, J.A. / Zhou, H.B. / Nettles, K.W.
External linksMol. Syst. Biol. / PubMed:27107013
MethodsX-ray diffraction
Resolution1.771 - 2.863 Å
Structure data

PDB-4zn7:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in complex with Diethylstilbestrol
Method: X-RAY DIFFRACTION / Resolution: 1.934 Å

PDB-4znh:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in complex with a 2-Fluoro-substituted OBHS derivative
Method: X-RAY DIFFRACTION / Resolution: 1.933 Å

PDB-4zns:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in complex with a 3-Fluoro-substituted OBHS derivative
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-4znt:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in complex with a 3-Bromo-substituted OBHS derivative
Method: X-RAY DIFFRACTION / Resolution: 1.903 Å

PDB-4znu:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in complex with a 2-Methyl-substituted OBHS derivative
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-4znv:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in complex with a 2-Methoxy-substituted OBHS derivative
Method: X-RAY DIFFRACTION / Resolution: 1.771 Å

PDB-4znw:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in complex with a 4-Bromo-substituted OBHS derivative
Method: X-RAY DIFFRACTION / Resolution: 2.31 Å

PDB-5di7:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with an methyl-substituted A-CD ring estrogen derivative (1S,3aR,5S,7aS)-5-(4-hydroxy-2-methylphenyl)-7a-methyloctahydro-1H-inden-1-ol
Method: X-RAY DIFFRACTION / Resolution: 2.241 Å

PDB-5did:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a difluoro-substituted A-CD ring estrogen derivative (1S,3aR,5S,7aS)-5-(2,3-difluoro-4-hydroxyphenyl)-7a-methyloctahydro-1H-inden-1-ol
Method: X-RAY DIFFRACTION / Resolution: 2.24 Å

PDB-5die:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a trifluoro-substituted A-CD ring estrogen derivative (1S,3aR,5S,7aS)-7a-methyl-5-(2,3,5-trifluoro-4-hydroxyphenyl)octahydro-1H-inden-1-ol
Method: X-RAY DIFFRACTION / Resolution: 2.24 Å

PDB-5dig:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a trifluoromethyl-substituted A-CD ring estrogen derivative (1S,3aR,5S,7aS)-5-[4-hydroxy-2-(trifluoromethyl)phenyl]-7a-methyloctahydro-1H-inden-1-ol
Method: X-RAY DIFFRACTION / Resolution: 2.24 Å

PDB-5dk9:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a phenylamino-substituted ethyl triaryl-ethylene derivative 4,4'-{2-[3-(phenylamino)phenyl]but-1-ene-1,1-diyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-5dkb:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a 3-methylphenylamino-substituted ethyl triaryl-ethylene derivative 4,4'-(2-{3-[(3-methylphenyl)amino]phenyl}but-1-ene-1,1-diyl)diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5dke:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a 3-naphthyl-substituted, methyl, cis-diaryl-ethylene compound 4,4'-[2-(naphthalen-2-yl)prop-1-ene-1,1-diyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-5dkg:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a t-butyl-substituted, methyl, triaryl-ethylene derivative 4,4'-[2-(4-tert-butylphenyl)prop-1-ene-1,1-diyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-5dks:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a 2-naphthylamino-substituted, ethyl, triaryl-ethylene derivative 4,4'-{2-[3-(naphthalen-1-ylamino)phenyl]but-1-ene-1,1-diyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-5dl4:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a phenylamino-substituted, methyl, triaryl-ethylene derivative 4,4'-{2-[3-(phenylamino)phenyl]prop-1-ene-1,1-diyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5dlr:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a triaryl-ethylene compound 4,4'-(2-phenylethene-1,1-diyl)diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.26 Å

PDB-5dmc:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a nitrile-substituted triaryl-ethylene derivative 3,3-bis(4-hydroxyphenyl)-2-phenylprop-2-enenitrile
Method: X-RAY DIFFRACTION / Resolution: 2.403 Å

PDB-5dmf:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a 4-fluorophenylamino-substituted, methyl triaryl-ethylene derivative 4,4'-(2-{3-[(4-fluorophenyl)amino]phenyl}prop-1-ene-1,1-diyl)diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5dp0:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a 4-fluorophenylamino-substituted triaryl-ethylene derivative 4,4'-(2-{3-[(4-fluorophenyl)amino]phenyl}ethene-1,1-diyl)diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.382 Å

PDB-5drj:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a dichloro-substituted, 3-methyl 2,5-diarylthiophene-core ligand 4,4'-(3-methylthiene-2,5-diyl)bis(3-chlorophenol)
Method: X-RAY DIFFRACTION / Resolution: 2.07 Å

PDB-5drm:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a dichloro-substituted, 2,5-diarylthiophene-core ligand 4,4'-thiene-2,5-diylbis(3-chlorophenol)
Method: X-RAY DIFFRACTION / Resolution: 2.241 Å

PDB-5dtv:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a dimethyl-substituted, 3,4-diarylthiophene dioxide core ligand
Method: X-RAY DIFFRACTION / Resolution: 2.295 Å

PDB-5du5:
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a dichloro-substituted, 3,4-diarylthiophene dioxide core ligand
Method: X-RAY DIFFRACTION / Resolution: 2.195 Å

PDB-5due:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a para-Hydroxyl-substituted, Sulfoxide-bridged Oxabicyclic Heptene Sulfonate (SOBHS)-2 Analog 4-hydroxyphenyl (1S,2S,4S,5S,6R,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]heptane-2-sulfonate 7-oxide
Method: X-RAY DIFFRACTION / Resolution: 2.09 Å

PDB-5dug:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a Sulfoxide-bridged Oxabicyclic Heptene Sulfonate (SOBHS)-2 analog phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide
Method: X-RAY DIFFRACTION / Resolution: 2.252 Å

PDB-5duh:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a Sulfoxide-bridged Oxabicyclic Heptene Sulfonate (SOBHS)-3 analog phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-3-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide
Method: X-RAY DIFFRACTION / Resolution: 2.24 Å

PDB-5dvs:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a 2-Methyl-substituted Triaryl-imine 4,4'-[(2-methylphenyl)carbonimidoyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-5dvv:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a Triaryl-imine analog 4,4'-(phenylcarbonimidoyl)diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.505 Å

PDB-5dwe:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a 2-Chloro-substituted Triaryl-imine analog 4,4'-[(2-chlorophenyl)carbonimidoyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

PDB-5dwg:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Triaryl-substituted Imine Analog, 4-{(E)-(4-hydroxyphenyl)[(2-methylphenyl)imino]methyl}benzene-1,3-diol
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-5dwi:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a Resorcinyl 2-Chloro-substituted Diaryl-imine analog 4-[(E)-[(2-chlorophenyl)imino](4-hydroxyphenyl)methyl]benzene-1,3-diol
Method: X-RAY DIFFRACTION / Resolution: 2.43 Å

PDB-5dwj:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a Resorcinyl 4-Fluoro-substituted Diaryl-imine analog 4-[(E)-[(4-fluorophenyl)imino](4-hydroxyphenyl)methyl]benzene-1,3-diol
Method: X-RAY DIFFRACTION / Resolution: 2.001 Å

PDB-5dxk:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-[(9s)-bicyclo[3.3.1]non-9-ylmethanediyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.226 Å

PDB-5dxm:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 3-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(4-hydroxyphenyl)methyl]phenol
Method: X-RAY DIFFRACTION / Resolution: 2.37 Å

PDB-5dxp:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(phenyl)methyl]phenol
Method: X-RAY DIFFRACTION / Resolution: 2.201 Å

PDB-5dxq:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-[(1s,5s)-bicyclo[3.3.1]non-9-ylidenemethanediyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5dxr:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[(3R)-3-methylcyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-5dy8:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[(3S)-3-ethylcyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.031 Å

PDB-5dyb:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-(3,4-dihydronaphthalen-2(1H)-ylidenemethanediyl)diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.27 Å

PDB-5dyd:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[(3S)-3-(methylsulfanyl)cyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.485 Å

PDB-5dz0:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-[(4-methylcyclohexylidene)methanediyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.24 Å

PDB-5dz1:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-[(4-ethylcyclohexylidene)methanediyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5dz3:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[4-(fluoromethyl)cyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-5dzh:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[4-(2-hydroxyethyl)cyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.11 Å

PDB-5dzi:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[(3S)-3-(2-hydroxyethyl)cyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5e0w:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[(3S)-3-(4-hydroxyphenyl)cyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-5e0x:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[(3S)-3-(4-methoxyphenyl)cyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.014 Å

PDB-5e14:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[(3R)-3-phenylcyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.22 Å

PDB-5e15:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[4-(2-hydroxyethyl)cyclohexylidene]methanediyl}diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5e19:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative methyl {4-[bis(4-hydroxyphenyl)methylidene]cyclohexyl}acetate
Method: X-RAY DIFFRACTION / Resolution: 2.24 Å

PDB-5e1c:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative dimethyl {(1S)-3-[bis(4-hydroxyphenyl)methylidene]cyclohexyl}propanedioate
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-5egv:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex the 3,4-diaryl-furan derivative 3-chloranyl-4-[4-(2-chloranyl-4-oxidanyl-phenyl)furan-3-yl]phenol
Method: X-RAY DIFFRACTION / Resolution: 2.863 Å

PDB-5ehj:
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-[(4aR,8aR)-octahydronaphthalen-2(1H)-ylidenemethanediyl]diphenol
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-5ei1:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with the imidazopyridine derivative 2-(4-hydroxyphenyl)-3-iodanyl-imidazo[1,2-a]pyridin-6-ol
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5eit:
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with the imidazopyridine derivative 2-(4-hydroxyphenyl)-3-(trifluoromethyl)imidazo[1,2-a]pyridin-6-ol
Method: X-RAY DIFFRACTION / Resolution: 2.68 Å

Chemicals

ChemComp-DES:
DIETHYLSTILBESTROL / medication, hormone*YM

ChemComp-HOH:
WATER

ChemComp-OBC:
2-fluorophenyl (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate

ChemComp-OFB:
3-fluorophenyl (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate

ChemComp-OBB:
3-bromophenyl (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate

ChemComp-4Q9:
2-methylphenyl (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate

ChemComp-4Q7:
2-methoxyphenyl (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate

ChemComp-OBM:
4-bromophenyl (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate

ChemComp-5CQ:
(1S,3aR,5S,7aS)-5-(4-hydroxy-2-methylphenyl)-7a-methyloctahydro-1H-inden-1-ol

ChemComp-5CK:
(1S,3aR,5S,7aS)-5-(2,3-difluoro-4-hydroxyphenyl)-7a-methyloctahydro-1H-inden-1-ol

ChemComp-5CJ:
(1S,3aR,5S,7aS)-7a-methyl-5-(2,3,5-trifluoro-4-hydroxyphenyl)octahydro-1H-inden-1-ol

ChemComp-5CE:
(1S,3aR,5S,7aS)-5-[4-hydroxy-2-(trifluoromethyl)phenyl]-7a-methyloctahydro-1H-inden-1-ol

ChemComp-5CC:
4,4'-{2-[3-(phenylamino)phenyl]but-1-ene-1,1-diyl}diphenol

ChemComp-5C9:
4,4'-(2-{3-[(3-methylphenyl)amino]phenyl}but-1-ene-1,1-diyl)diphenol

ChemComp-5C8:
4,4'-[2-(naphthalen-2-yl)prop-1-ene-1,1-diyl]diphenol

ChemComp-5C7:
4,4'-[2-(4-tert-butylphenyl)prop-1-ene-1,1-diyl]diphenol

ChemComp-5C6:
4,4'-{2-[3-(naphthalen-1-ylamino)phenyl]but-1-ene-1,1-diyl}diphenol

ChemComp-5C4:
4,4'-{2-[3-(phenylamino)phenyl]prop-1-ene-1,1-diyl}diphenol

ChemComp-5DJ:
4,4'-(2-phenylethene-1,1-diyl)diphenol

ChemComp-5DH:
3,3-bis(4-hydroxyphenyl)-2-phenylprop-2-enenitrile

ChemComp-5DG:
4,4'-(2-{3-[(4-fluorophenyl)amino]phenyl}prop-1-ene-1,1-diyl)diphenol

ChemComp-5ES:
4,4'-(2-{3-[(4-fluorophenyl)amino]phenyl}ethene-1,1-diyl)diphenol

ChemComp-5EU:
4,4'-(3-methylthiene-2,5-diyl)bis(3-chlorophenol)

ChemComp-5ET:
4,4'-thiene-2,5-diylbis(3-chlorophenol)

ChemComp-5FS:
3,4-bis(4-hydroxy-2-methylphenyl)-1H-1lambda~6~-thiophene-1,1-dione

ChemComp-5G2:
3,4-bis(2-chloro-4-hydroxyphenyl)-1H-1lambda~6~-thiophene-1,1-dione

ChemComp-5FY:
4-hydroxyphenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide

ChemComp-5FV:
phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide

ChemComp-5FT:
phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-3-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide

ChemComp-5G7:
4,4'-[(2-methylphenyl)carbonimidoyl]diphenol

ChemComp-5G6:
4,4'-(phenylcarbonimidoyl)diphenol

ChemComp-5G5:
4,4'-[(2-chlorophenyl)carbonimidoyl]diphenol

ChemComp-5G4:
4-{(E)-(4-hydroxyphenyl)[(2-methylphenyl)imino]methyl}benzene-1,3-diol

ChemComp-5G3:
4-[(E)-[(2-chlorophenyl)imino](4-hydroxyphenyl)methyl]benzene-1,3-diol

ChemComp-5J2:
4-[(E)-[(4-fluorophenyl)imino](4-hydroxyphenyl)methyl]benzene-1,3-diol

ChemComp-5J1:
4,4'-[(9s)-bicyclo[3.3.1]non-9-ylmethanediyl]diphenol

ChemComp-5J0:
3-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(4-hydroxyphenyl)methyl]phenol

ChemComp-5HX:
4-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(phenyl)methyl]phenol

ChemComp-5HZ:
4,4'-[(1s,5s)-bicyclo[3.3.1]non-9-ylidenemethanediyl]diphenol

ChemComp-5HW:
4,4'-{[(3R)-3-methylcyclohexylidene]methanediyl}diphenol

ChemComp-5K4:
4,4'-{[(3S)-3-ethylcyclohexylidene]methanediyl}diphenol

ChemComp-5K2:
4,4'-(3,4-dihydronaphthalen-2(1H)-ylidenemethanediyl)diphenol

ChemComp-5K1:
4,4'-{[(3S)-3-(methylsulfanyl)cyclohexylidene]methanediyl}diphenol

ChemComp-5K0:
4,4'-[(4-methylcyclohexylidene)methanediyl]diphenol

ChemComp-5JY:
4,4'-[(4-ethylcyclohexylidene)methanediyl]diphenol

ChemComp-5JX:
4,4'-{[4-(fluoromethyl)cyclohexylidene]methanediyl}diphenol

ChemComp-5KG:
4,4'-{[4-(2-hydroxyethyl)cyclohexylidene]methanediyl}diphenol

ChemComp-5KF:
4,4'-{[(3S)-3-(2-hydroxyethyl)cyclohexylidene]methanediyl}diphenol

ChemComp-5KE:
4,4'-{[(3S)-3-(4-hydroxyphenyl)cyclohexylidene]methanediyl}diphenol

ChemComp-5KD:
4,4'-{[(3S)-3-(4-methoxyphenyl)cyclohexylidene]methanediyl}diphenol

ChemComp-5KB:
4,4'-{[(3R)-3-phenylcyclohexylidene]methanediyl}diphenol

ChemComp-5KA:
4,4'-({4-[2-(4-fluorobutoxy)ethyl]cyclohexylidene}methanediyl)diphenol

ChemComp-5K7:
methyl {4-[bis(4-hydroxyphenyl)methylidene]cyclohexyl}acetate

ChemComp-5K8:
dimethyl {(1S)-3-[bis(4-hydroxyphenyl)methylidene]cyclohexyl}propanedioate

ChemComp-5OS:
3-chloranyl-4-[4-(2-chloranyl-4-oxidanyl-phenyl)furan-3-yl]phenol

ChemComp-5K5:
4,4'-[(4aR,8aR)-octahydronaphthalen-2(1H)-ylidenemethanediyl]diphenol

ChemComp-5OR:
2-(4-hydroxyphenyl)-3-iodanyl-imidazo[1,2-a]pyridin-6-ol

ChemComp-5P1:
2-(4-hydroxyphenyl)-3-(trifluoromethyl)imidazo[1,2-a]pyridin-6-ol

Source
  • homo sapiens (human)
KeywordsTRANSCRIPTION / Nuclear receptor Transcription factor Nucleus protein-ligand complex / Nuclear receptor / transcription factor / ligand binding / protein-ligand complex

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more