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Structure paper

TitleStructural insights into the mechanism of Escherichia coli YmdB: A 2'-O-acetyl-ADP-ribose deacetylase
Journal, issue, pagesJ. Struct. Biol., Vol. 192, Page 478-486, Year 2015
Publish dateJun 30, 2015 (structure data deposition date)
AuthorsZhang, W. / Wang, C. / Song, Y. / Shao, C. / Zhang, X. / Zang, J.
External linksJ. Struct. Biol. / PubMed:26481419
MethodsX-ray diffraction
Resolution1.8 - 2.98 Å
Structure data

PDB-5cb3:
Structural Insights into the Mechanism of Escherichia coli Ymdb
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-5cb5:
Structural Insights into the Mechanism of Escherichia coli Ymdb
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-5cms:
Structural Insights into the Mechanism of Escherichia coli Ymdb
Method: X-RAY DIFFRACTION / Resolution: 2.98 Å

Chemicals

ChemComp-APR:
ADENOSINE-5-DIPHOSPHORIBOSE

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-ACT:
ACETATE ION

ChemComp-ZOD:
[(2R,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2,4-bis(oxidanyl)oxolan-3-yl] ethanoate

Source
  • escherichia coli k12 (bacteria)
  • escherichia coli (E. coli)
KeywordsHYDROLASE / deacetylase / ADPr / OAADPr / macro domain

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