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TitleA Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens.
Journal, issue, pagesPlos Pathog., Vol. 11, Page e1005071-e1005071, Year 2015
Publish dateSep 9, 2014 (structure data deposition date)
AuthorsEl Sahili, A. / Li, S.Z. / Lang, J. / Virus, C. / Planamente, S. / Ahmar, M. / Guimaraes, B.G. / Aumont-Nicaise, M. / Vigouroux, A. / Soulere, L. ...El Sahili, A. / Li, S.Z. / Lang, J. / Virus, C. / Planamente, S. / Ahmar, M. / Guimaraes, B.G. / Aumont-Nicaise, M. / Vigouroux, A. / Soulere, L. / Reader, J. / Queneau, Y. / Faure, D. / Morera, S.
External linksPlos Pathog. / PubMed:26244338
MethodsX-ray diffraction
Resolution1.72 - 2.65 Å
Structure data

PDB-4ra1:
PBP AccA from A. tumefaciens C58 in complex with D-Glucose-2-phosphate
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-4ze8:
PBP AccA from A. tumefaciens C58
Method: X-RAY DIFFRACTION / Resolution: 1.72 Å

PDB-4ze9:
Se-PBP AccA from A. tumefaciens C58 in complex with agrocinopine A
Method: X-RAY DIFFRACTION / Resolution: 2.65 Å

PDB-4zeb:
PBP AccA from A. tumefaciens C58 in complex with agrocinopine A
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

PDB-4zec:
PBP AccA from A. tumefaciens C58 in complex with agrocin 84
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-4zed:
PBP AccA from A. tumefaciens C58 in complex with agrocinopine-3'-O-benzoate
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-4zei:
PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-4zek:
PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-isopropylphosphate
Method: X-RAY DIFFRACTION / Resolution: 2.09 Å

Chemicals

ChemComp-ALX:
2-O-phosphono-alpha-D-glucopyranose

ChemComp-BNX:
2-O-phosphono-beta-D-glucopyranose

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-GOL:
GLYCEROL

ChemComp-LAO:
2-O-phosphono-alpha-L-arabinopyranose

ChemComp-ARA:
alpha-L-arabinopyranose

ChemComp-C84:
[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]oxy-N-[9-[(2R,3S,5R)-5-[[[(2R,3S)-4-methyl-2,3-bis(oxidanyl)pentanoyl]amino]-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]purin-6-yl]phosphonamidic acid

ChemComp-AGW:
[(2S,3S,4R,5R)-2,5-bis(hydroxymethyl)-2-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-[oxidanyl-[(2R,3R,4S,5S)-2,4,5-tris(oxidanyl)oxan-3-yl]oxy-phosphoryl]oxy-oxolan-3-yl] benzoate

ChemComp-LAH:
2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinopyranose

ChemComp-TOE:
2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL

Source
  • agrobacterium tumefaciens (bacteria)
  • agrobacterium tumefaciens (strain c58 / atcc 33970) (bacteria)
  • agrobacterium fabrum str. c58 (bacteria)
  • agrobacterium fabrum (strain c58 / atcc 33970) (bacteria)
KeywordsTRANSPORT PROTEIN / Periplasmic binding protein C cluster / PBP FROM C CLUSTER / PBP FROM CLASS C / PBP / CLASS C

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