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Structure paper

TitleStructural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity
Journal, issue, pagesProteins, Vol. 84, Page 934-947, Year 2016
Publish dateApr 13, 2015 (structure data deposition date)
AuthorsTakase, R. / Maruyama, Y. / Oiki, S. / Mikami, B. / Murata, K. / Hashimoto, W.
External linksProteins / PubMed:27028675
MethodsX-ray diffraction
Resolution1.55 - 1.7 Å
Structure data

PDB-4z9x:
Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus pyogenes
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-4z9y:
Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Pectobacterium carotovorum
Method: X-RAY DIFFRACTION / Resolution: 1.63 Å

PDB-4za2:
Crystal structure of Pectobacterium carotovorum 2-keto-3-deoxy-D-gluconate dehydrogenase complexed with NAD+
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

Source
  • streptococcus pyogenes serotype m1 (bacteria)
  • pectobacterium carotovorum subsp. carotovorum (bacteria)
KeywordsOXIDOREDUCTASE / Glycosaminoglycan metabolism / Short-chain dehydrogenase/reductase / Rossmann fold / NADH specificity / Pectin metabolism / dual coenzyme specificity

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