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Structure paper

TitleL-Arabinose Binding, Isomerization, and Epimerization by D-Xylose Isomerase: X-Ray/Neutron Crystallographic and Molecular Simulation Study.
Journal, issue, pagesStructure, Vol. 22, Page 1287-1300, Year 2014
Publish dateMay 14, 2014 (structure data deposition date)
AuthorsLangan, P. / Sangha, A.K. / Wymore, T. / Parks, J.M. / Yang, Z.K. / Hanson, B.L. / Fisher, Z. / Mason, S.A. / Blakeley, M.P. / Forsyth, V.T. ...Langan, P. / Sangha, A.K. / Wymore, T. / Parks, J.M. / Yang, Z.K. / Hanson, B.L. / Fisher, Z. / Mason, S.A. / Blakeley, M.P. / Forsyth, V.T. / Glusker, J.P. / Carrell, H.L. / Smith, J.C. / Keen, D.A. / Graham, D.E. / Kovalevsky, A.
External linksStructure / PubMed:25132082
Methodsneutron diffraction / X-ray diffraction
Resolution1.55 - 2 Å
Structure data

PDB-4qdp:
Joint X-ray and neutron structure of Streptomyces rubiginosus D-xylose isomerase in complex with two Cd2+ ions and cyclic beta-L-arabinose
Method: NEUTRON DIFFRACTION / X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4qdw:
Joint X-ray and neutron structure of Streptomyces rubiginosus D-xylose isomerase in complex with two Ni2+ ions and linear L-arabinose
Method: X-RAY DIFFRACTION / NEUTRON DIFFRACTION / Resolution: 1.8 Å

PDB-4qe1:
Room temperature X-ray structure of D-xylose isomerase in complex with two Cd2+ ions and L-ribulose
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-4qe4:
Room temperature X-ray structure of D-xylose isomerase in complex with two Ni2+ ions and L-ribulose
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-4qe5:
Room temperature X-ray structure of D-xylose isomerase in complex with two Mg2+ ions and L-ribulose
Method: X-RAY DIFFRACTION / Resolution: 1.56 Å

PDB-4qee:
Room temperature X-ray structure of D-xylose isomerase in complex with two Ni2+ ions and L-ribose
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-4qeh:
Room temperature X-ray structure of D-xylose isomerase in complex with two Mg2+ ions and L-ribose
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

Chemicals

ChemComp-CD:
Unknown entry

ChemComp-ARB:
beta-L-arabinopyranose

ChemComp-DOD:
DEUTERATED WATER

ChemComp-NI:
NICKEL (II) ION

ChemComp-LAI:
L-arabinose

ChemComp-RUU:
alpha-L-ribulofuranose

ChemComp-HOH:
WATER

ChemComp-34V:
beta-L-ribulofuranose

ChemComp-MG:
Unknown entry

ChemComp-Z6J:
alpha-L-ribofuranose

ChemComp-32O:
beta-L-ribofuranose

Source
  • streptomyces rubiginosus (bacteria)
KeywordsISOMERASE / TIM barrel / sugar isomerase / monosaccharides

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