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Structure paper

TitleAgrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Journal, issue, pagesPlos Pathog., Vol. 10, Page e1004444-e1004444, Year 2014
Publish dateFeb 21, 2014 (structure data deposition date)
AuthorsLang, J. / Vigouroux, A. / Planamente, S. / El Sahili, A. / Blin, P. / Aumont-Nicaise, M. / Dessaux, Y. / Morera, S. / Faure, D.
External linksPlos Pathog. / PubMed:25299655
MethodsX-ray diffraction
Resolution1.55 - 1.89 Å
Structure data

PDB-4p0i:
Structure of the PBP NocT
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

PDB-4pow:
Structure of the PBP NocT in complex with pyronopaline
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-4pp0:
Structure of the PBP NocT-M117N in complex with pyronopaline
Method: X-RAY DIFFRACTION / Resolution: 1.57 Å

PDB-5ovz:
High resolution structure of the PBP NocT in complex with nopaline
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-OP1:
1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline

ChemComp-2W2:
N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid

ChemComp-NA:
Unknown entry

Source
  • agrobacterium tumefaciens (bacteria)
  • agrobacterium (bacteria)
KeywordsTRANSPORT PROTEIN / periplasmic binding protein / PBP / class F

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