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Structure paper

TitleStructure and mechanism of human DNA polymerase eta.
Journal, issue, pagesNature, Vol. 465, Page 1044-1048, Year 2010
Publish dateApr 28, 2010 (structure data deposition date)
AuthorsBiertumpfel, C. / Zhao, Y. / Kondo, Y. / Ramon-Maiques, S. / Gregory, M. / Lee, J.Y. / Masutani, C. / Lehmann, A.R. / Hanaoka, F. / Yang, W.
External linksNature / PubMed:20577208
MethodsX-ray diffraction
Resolution1.75 - 2.15 Å
Structure data

PDB-3mr2:
Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

PDB-3mr3:
Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1)
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-3mr5:
Human DNA polymerase eta - DNA ternary complex with a CPD 1bp upstream of the active site (TT3)
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3mr6:
Human DNA polymerase eta - DNA ternary complex with a CPD 2bp upstream of the active site (TT4)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3si8:
Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2)
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

Chemicals

ChemComp-DZ4:
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine

ChemComp-MG:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-XG4:
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine

ChemComp-3D1:
(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol

ChemComp-DTT:
2,3-DIHYDROXY-1,4-DITHIOBUTANE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CO:
Unknown entry

Source
  • homo sapiens (human)
KeywordsTRANSFERASE/DNA / Pol eta / Polymerase / thymine dimer / CPD / XPV / Xeroderma pigmentosum variant / DNA damage / TRANSFERASE-DNA complex / protein-DNA complex / multiple domains / three are alpha/beta fold and one of the four is helical fold / DNA polymerase / DNA binding / Mg2+ and dNTP binding / affinity tag is added and partially removed at the N-terminal end / nucleus

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