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Structure paper

TitleTrapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Journal, issue, pagesPlos Biol., Vol. 9, Page e1001066-e1001066, Year 2011
Publish dateMar 16, 2010 (structure data deposition date)
AuthorsFieulaine, S. / Boularot, A. / Artaud, I. / Desmadril, M. / Dardel, F. / Meinnel, T. / Giglione, C.
External linksPlos Biol. / PubMed:21629676
MethodsX-ray diffraction
Resolution1.3 - 3 Å
Structure data

PDB-3m6o:
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B)
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3m6p:
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with actinonin
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3m6q:
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41Q mutant in complex with actinonin
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-3m6r:
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41M mutant in complex with actinonin
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-3o3j:
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with inhibitor 6b
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-3pn2:
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) (crystallized in PEG-550-MME)
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3pn3:
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with inhibitor 21
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-3pn4:
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with actinonin (crystallized in PEG-550-MME)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3pn5:
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) G41Q mutant
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-3pn6:
Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) G41M mutant
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-BB2:
ACTINONIN / antitumor, antibiotic*YM

ChemComp-BB4:
2-(5-bromo-1H-indol-3-yl)-N-hydroxyacetamide

ChemComp-PN3:
tert-butyl {(2S)-1-[formyl(hydroxy)amino]-3-phenylpropan-2-yl}carbamate

Source
  • arabidopsis thaliana (thale cress)
KeywordsHYDROLASE / peptide deformylase / 1B / PDF / N-terminal excision pathway / NME / Arabidopsis thaliana / induced-fit / Metal-binding / Mitochondrion / Protein biosynthesis / Transit peptide / HYDROLASE/ANTIBIOTIC / HYDROLASE-ANTIBIOTIC complex / HYDROLASE/HYDROLASE INHIBITOR / HYDROLASE-HYDROLASE INHIBITOR complex

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