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Structure paper

TitleStructures of Helicobacter pylori shikimate kinase reveal a selective inhibitor-induced-fit mechanism
Journal, issue, pagesPlos One, Vol. 7, Page e33481-e33481, Year 2012
Publish dateJun 9, 2009 (structure data deposition date)
AuthorsCheng, W.C. / Chen, Y.F. / Wang, H.J. / Hsu, K.C. / Lin, S.C. / Chen, T.J. / Yang, J.M. / Wang, W.C.
External linksPlos One / PubMed:22438938
MethodsX-ray diffraction
Resolution1.8 - 2.53 Å
Structure data

PDB-3hr7:
Crystal structure of the shikimate kinase-sulfate complex from Helicobacter pylori
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3mrs:
Crystal structure of shikimate kinase mutant (R57A) from Helicobacter pylori
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-3muf:
Shikimate kinase from Helicobacter pylori in complex with shikimate-3-phosphate and ADP
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-3n2e:
Crystal structure of Helicobactor pylori shikimate kinase in complex with NSC162535
Method: X-RAY DIFFRACTION / Resolution: 2.53 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-S3P:
SHIKIMATE-3-PHOSPHATE

ChemComp-OSA:
7-amino-4-hydroxy-3-[(E)-(5-hydroxy-7-sulfonaphthalen-2-yl)diazenyl]naphthalene-2-sulfonic acid

ChemComp-TLA:
L(+)-TARTARIC ACID

Source
  • helicobacter pylori (bacteria)
KeywordsTRANSFERASE / three-layer alpha/beta fold / nucleoside monophosphate (NMP) kinase family / Amino-acid biosynthesis / Aromatic amino acid biosynthesis / ATP-binding / Kinase / Magnesium / Metal-binding / Nucleotide-binding / helix-sheet complex / alpha-beta-alpha fold

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