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Structure paper

TitleCrystal Structure Analysis of Free and Substrate-Bound 6-Hydroxy-l-Nicotine Oxidase from Arthrobacter nicotinovorans.
Journal, issue, pagesJ. Mol. Biol., Vol. 396, Page 785-799, Year 2010
Publish dateOct 13, 2009 (structure data deposition date)
AuthorsKachalova, G.S. / Bourenkov, G.P. / Mengesdorf, T. / Schenk, S. / Maun, H.R. / Burghammer, M. / Riekel, C. / Decker, K. / Bartunik, H.D.
External linksJ. Mol. Biol. / PubMed:20006620
MethodsX-ray diffraction
Resolution1.95 - 2.85 Å
Structure data

PDB-3k7m:
Crystal structure of 6-hydroxy-L-nicotine oxidase from Arthrobacter nicotinovorans
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-3k7q:
Crystal structure of substrate-bound 6-hydroxy-L-nicotine oxidase from Arthrobacter nicotinovorans
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3k7t:
Crystal structure of apo-form 6-hydroxy-L-nicotine oxidase, crystal form P3121
Method: X-RAY DIFFRACTION / Resolution: 2.85 Å

PDB-3ngc:
Complex of 6-hydroxy-L-nicotine oxidase with intermediate methylmyosmine product formed during catalytic turnover
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-3nh3:
Complex of 6-hydroxy-L-nicotine oxidase with final ketone product formed during catalytic turnover
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3nho:
Complex of 6-hydroxy-L-nicotine oxidase with product bound at active site
Method: X-RAY DIFFRACTION / Resolution: 2.85 Å

PDB-3nk0:
Complex of 6-hydroxy-L-nicotine oxidase with inhibitor bound at active site and turnover product at exit cavity
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-3nk1:
Complex of 6-hydroxy-L-nicotine oxidase with serotonin
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-3nk2:
Complex of 6-hydroxy-L-nicotine oxidase with dopamine
Method: X-RAY DIFFRACTION / Resolution: 2.65 Å

PDB-3nn0:
Complex of 6-hydroxy-L-nicotine oxidase with nicotinamide
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

PDB-3nn6:
Crystal structure of inhibitor-bound in active centre 6-hydroxy-L-nicotine oxidase from Arthrobacter nicotinovorans
Method: X-RAY DIFFRACTION / Resolution: 2.19 Å

Chemicals

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-GP7:
(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate

ChemComp-HOH:
WATER

ChemComp-HNL:
5-[(2S)-1-methylpyrrolidin-2-yl]pyridin-2-ol

ChemComp-HNH:
5-(1-methyl-4,5-dihydro-1H-pyrrol-2-yl)pyridin-2-ol

ChemComp-HNM:
1-(6-hydroxypyridin-3-yl)-4-(methylamino)butan-1-one

ChemComp-HNK:
5-[(2R)-1-methylpyrrolidin-2-yl]pyridin-2-ol

ChemComp-SRO:
SEROTONIN / neurotransmitter*YM

ChemComp-LDP:
L-DOPAMINE / medication*YM

ChemComp-NCA:
NICOTINAMIDE / medication*YM

ChemComp-FB0:
(2R,3S,4S)-5-({[(acetylcarbamoyl)amino]methyl}[(3S,4R)-6-amino-3,4-dimethylhexyl]amino)-2,3,4-trihydroxypentyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)

Source
  • arthrobacter nicotinovorans (bacteria)
KeywordsOXIDOREDUCTASE / ENANTIOMERIC SUBSTRATES / FLAVOENZYMES / NICOTINE DEGRADATION / OXIDASE / ENANTHIOMERIC SUBSTRATE-INHIBITOR / FAD fold / amino oxidase / FAD binding / cytosol / OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR / ENANTIOMERIC SUBSTRATE- INHIBITOR / FAD-binding fold / OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex

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