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TitleCatechol 1,2-dioxygenase from the Gram-positive Rhodococcus opacus 1CP: Quantitative structure/activity relationship and the crystal structures of native enzyme and catechols adducts.
Journal, issue, pagesJ. Struct. Biol., Vol. 170, Page 548-564, Year 2010
Publish dateMay 14, 2009 (structure data deposition date)
AuthorsMatera, I. / Ferraroni, M. / Kolomytseva, M. / Golovleva, L. / Scozzafava, A. / Briganti, F.
External linksJ. Struct. Biol. / PubMed:20040374
MethodsX-ray diffraction
Resolution1.55 - 2.4 Å
Structure data

PDB-3hgi:
Crystal structure of Catechol 1,2-Dioxygenase from the gram-positive Rhodococcus opacus 1CP
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-3hhx:
Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with pyrogallol
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3hhy:
Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-3hj8:
Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1CP in complex with 4-chlorocatechol
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-3hjq:
Crystal structure of catechol 1,2-dioxygenase from Rhodococcus opacus 1CP in complex with 3-methylcatechol
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3hjs:
Crystal structure of catechol 1,2-dioxygenase from Rhodococcus opacus 1CP in complex with 4-methylcatechol
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3hkp:
Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with protocatechuate
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-3i4v:
Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1CP in complex with 3-chlorocatechol
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3i4y:
Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with 3,5-dichlorocatechol
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-3i51:
Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with 4,5-dichlorocatechol
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-FE:
Unknown entry

ChemComp-CO3:
CARBONATE ION

ChemComp-6PL:
(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-BEZ:
BENZOIC ACID

ChemComp-HOH:
WATER

ChemComp-PYG:
BENZENE-1,2,3-TRIOL

ChemComp-CAQ:
CATECHOL

ChemComp-MG:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-4CL:
4-CHLOROBENZENE-1,2-DIOL

ChemComp-MBD:
3-METHYLCATECHOL

ChemComp-MCT:
4-METHYLCATECHOL

ChemComp-DHB:
3,4-DIHYDROXYBENZOIC ACID

ChemComp-3CE:
3-chlorobenzene-1,2-diol

ChemComp-35C:
3,5-dichlorobenzene-1,2-diol

ChemComp-45C:
4,5-dichlorobenzene-1,2-diol

Source
  • rhodococcus opacus (bacteria)
KeywordsOXIDOREDUCTASE / beta sandwich / Aromatic hydrocarbons catabolism / Dioxygenase / Iron / Metal-binding / beta-sandwich

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