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Structure paper

TitleCrystal structure of diaminopimelate epimerase from Arabidopsis thaliana, an amino acid racemase critical for L-lysine biosynthesis.
Journal, issue, pagesJ. Mol. Biol., Vol. 385, Page 580-594, Year 2009
Publish dateSep 18, 2008 (structure data deposition date)
AuthorsPillai, B. / Moorthie, V.A. / van Belkum, M.J. / Marcus, S.L. / Cherney, M.M. / Diaper, C.M. / Vederas, J.C. / James, M.N.
External linksJ. Mol. Biol. / PubMed:19013471
MethodsX-ray diffraction
Resolution1.95 - 2.3 Å
Structure data

PDB-3ejx:
Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana in complex with LL-AziDAP
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-3ekm:
Crystal structure of diaminopimelate epimerase form arabidopsis thaliana in complex with irreversible inhibitor DL-AziDAP
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-ZDP:
(2S,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID

ChemComp-HOH:
WATER

ChemComp-ZDR:
(2R,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID

Source
  • arabidopsis thaliana (thale cress)
KeywordsISOMERASE / Diaminopimelate epimerase / Arabidopsis / PLP-independenet amino acid racemase / aziridino-diaminopimelate / PLP-independent amino acid racemase / catalytic mechanism

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