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Structure paper

TitleAccommodation of GDP-linked sugars in the active site of GDP-perosamine synthase
Journal, issue, pagesBiochemistry, Vol. 47, Page 10685-10693, Year 2008
Publish dateJul 10, 2008 (structure data deposition date)
AuthorsCook, P.D. / Carney, A.E. / Holden, H.M.
External linksBiochemistry / PubMed:18795799
MethodsX-ray diffraction
Resolution1.6 - 1.7 Å
Structure data

PDB-3dr4:
GDP-perosamine synthase K186A mutant from Caulobacter crescentus with bound sugar ligand
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-3dr7:
GDP-perosamine synthase from Caulobacter crescentus with bound GDP-3-deoxyperosamine
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

Chemicals

ChemComp-G4M:
[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S,5S,6R)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-6-methyltetrahydro-2H-pyran-2-yl dihydrogen diphosphate

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-GPD:
(2R,3S,5S,6R)-5-amino-3-hydroxy-6-methyl-oxan-2-yl

Source
  • caulobacter crescentus (bacteria)
KeywordsTRANSFERASE / Perosamine / deoxysugar / pyridoxal phosphate / aspartate aminotransferase / o-antigen / lipopolysaccharide

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