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Structure paper

TitleStructural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 130, Page 8116-8117, Year 2008
Publish dateMay 8, 2008 (structure data deposition date)
AuthorsThore, S. / Frick, C. / Ban, N.
External linksJ. Am. Chem. Soc. / PubMed:18533652
MethodsX-ray diffraction
Resolution2 - 2.5 Å
Structure data

PDB-3d2g:
Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-3d2v:
Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3d2x:
Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine pyrophosphate
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-TPP:
THIAMINE DIPHOSPHATE

ChemComp-HOH:
WATER

ChemComp-PYI:
1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-METHYLPYRIDINIUM

ChemComp-D2X:
3-[(4-hydroxy-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium

Source
  • arabidopsis thaliana (thale cress)
KeywordsRNA / riboswitch / TPP / thiamine analogues / antibiotics / Arabidopsis thaliana / eukaryote / antibiotic / thiamine pyrophosphate / pyrithiamine pyrophosphate / complex / oxythiamine pyrophosphate / drugs

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