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Structure paper

TitleDiverse substrate recognition and hydrolysis mechanisms of human NUDT5
Journal, issue, pagesNucleic Acids Res., Vol. 39, Page 8972-8983, Year 2011
Publish dateDec 30, 2009 (structure data deposition date)
AuthorsArimori, T. / Tamaoki, H. / Nakamura, T. / Kamiya, H. / Ikemizu, S. / Takagi, Y. / Ishibashi, T. / Harashima, H. / Sekiguchi, M. / Yamagata, Y.
External linksNucleic Acids Res. / PubMed:21768126
MethodsX-ray diffraction
Resolution2.05 - 2.301 Å
Structure data

PDB-3ac9:
Crystal structure of human NUDT5 complexed with 8-oxo-dGDP and manganese
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3aca:
Crystal structure of human NUDT5 complexed with 8-oxo-dADP and manganese
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3l85:
Crystal structure of human NUDT5 complexed with 8-oxo-dGMP
Method: X-RAY DIFFRACTION / Resolution: 2.301 Å

Chemicals

ChemComp-8GD:
2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate)

ChemComp-MN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-8DD:
8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate

ChemComp-8OG:
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE

Source
  • homo sapiens (human)
KeywordsHYDROLASE/HYDROLASE INHIBITOR / Nudix motif / Magnesium / HYDROLASE-HYDROLASE INHIBITOR complex

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