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Structure paper

TitleStructurally Designed trans-2-Phenylcyclopropylamine Derivatives Potently Inhibit Histone Demethylase LSD1/KDM1
Journal, issue, pagesBiochemistry, Vol. 49, Page 6494-6503, Year 2010
Publish dateDec 21, 2009 (structure data deposition date)
AuthorsMimasu, S. / Umezawa, N. / Sato, S. / Higuchi, T. / Umehara, T. / Yokoyama, S.
External linksBiochemistry / PubMed:20568732
MethodsX-ray diffraction
Resolution3.1 - 3.2 Å
Structure data

PDB-3abt:
Crystal Structure of LSD1 in complex with trans-2-pentafluorophenylcyclopropylamine
Method: X-RAY DIFFRACTION / Resolution: 3.2 Å

PDB-3abu:
Crystal Structure of LSD1 in complex with a 2-PCPA derivative, S1201
Method: X-RAY DIFFRACTION / Resolution: 3.1 Å

Chemicals

ChemComp-2PF:
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(1R,3R,3aS)-1-hydroxy-10,11-dimethyl-4,6-dioxo-3-(pentafluorophenyl)-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate

ChemComp-12F:
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(1R,3R,3aS)-3-[2-(benzyloxy)-3-fluorophenyl]-1-hydroxy-10,11-dimethyl-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate

Source
  • homo sapiens (human)
KeywordsOXIDOREDUCTASE / Amine Oxidase / Histone demethylase / Tower domain / H3K4 / Structural Genomics / RIKEN Structural Genomics/Proteomics Initiative / RSGI / Chromatin regulator / Developmental protein / FAD / Nucleus / Phosphoprotein / Repressor / Transcription / Transcription regulation / NPPSFA / National Project on Protein Structural and Functional Analyses

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