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TitleStructural basis for the regulated protease and chaperone function of DegP.
Journal, issue, pagesNature, Vol. 453, Issue 7197, Page 885-890, Year 2008
Publish dateJun 12, 2008
AuthorsTobias Krojer / Justyna Sawa / Eva Schäfer / Helen R Saibil / Michael Ehrmann / Tim Clausen /
PubMed AbstractAll organisms have to monitor the folding state of cellular proteins precisely. The heat-shock protein DegP is a protein quality control factor in the bacterial envelope that is involved in ...All organisms have to monitor the folding state of cellular proteins precisely. The heat-shock protein DegP is a protein quality control factor in the bacterial envelope that is involved in eliminating misfolded proteins and in the biogenesis of outer-membrane proteins. Here we describe the molecular mechanisms underlying the regulated protease and chaperone function of DegP from Escherichia coli. We show that binding of misfolded proteins transforms hexameric DegP into large, catalytically active 12-meric and 24-meric multimers. A structural analysis of these particles revealed that DegP represents a protein packaging device whose central compartment is adaptable to the size and concentration of substrate. Moreover, the inner cavity serves antagonistic functions. Whereas the encapsulation of folded protomers of outer-membrane proteins is protective and might allow safe transit through the periplasm, misfolded proteins are eliminated in the molecular reaction chamber. Oligomer reassembly and concomitant activation on substrate binding may also be critical in regulating other HtrA proteases implicated in protein-folding diseases.
External linksNature / PubMed:18496527
MethodsEM (single particle) / X-ray diffraction
Resolution3 - 28.0 Å
Structure data

EMDB-1504:
Structural basis for the regulated protease and chaperone function of DegP
Method: EM (single particle) / Resolution: 23.0 Å

EMDB-1505: Structural basis for the regulated protease and chaperone function of DegP
PDB-2zle: Cryo-EM structure of DegP12/OMP
Method: EM (single particle) / Resolution: 28.0 Å

PDB-3cs0:
Crystal structure of DegP24
Method: X-RAY DIFFRACTION / Resolution: 3.0 Å

Source
  • escherichia coli (E. coli)
  • escherichia coli (strain k12) (bacteria)
KeywordsHYDROLASE / DegP / HtrA / protease / chaperone / PDZ / outer membrane protein / OMP / periplasm / Serine protease / Stress response / Ion transport / Phage recognition / Porin / Transmembrane / Transport

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