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Structure paper

TitleStructural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
Journal, issue, pagesJ. Biol. Chem., Vol. 282, Page 18497-18509, Year 2007
Publish dateJan 31, 2007 (structure data deposition date)
AuthorsNagae, M. / Tsuchiya, A. / Katayama, T. / Yamamoto, K. / Wakatsuki, S. / Kato, R.
External linksJ. Biol. Chem. / PubMed:17459873
MethodsX-ray diffraction
Resolution1.12 - 2.1 Å
Structure data

PDB-2eab:
Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form)
Method: X-RAY DIFFRACTION / Resolution: 1.12 Å

PDB-2eac:
Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with deoxyfuconojirimycin
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-2ead:
Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with substrate
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

PDB-2eae:
Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complexes with products
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-DFU:
(2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-FUC:
alpha-L-fucopyranose

ChemComp-FUL:
beta-L-fucopyranose

Source
  • bifidobacterium bifidum (bacteria)
KeywordsHYDROLASE / FUCOSIDASE / GLYCOSIDE HYDROLASE

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