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Structure paper

TitleStructural basis of family-wide Rab GTPase recognition by rabenosyn-5.
Journal, issue, pagesNature, Vol. 436, Page 415-419, Year 2005
Publish dateFeb 13, 2005 (structure data deposition date)
AuthorsEathiraj, S. / Pan, X. / Ritacco, C. / Lambright, D.G.
External linksNature / PubMed:16034420
MethodsX-ray diffraction
Resolution1.32 - 2.5 Å
Structure data

PDB-1yu9:
GppNHp-Bound Rab4A
Method: X-RAY DIFFRACTION / Resolution: 2.07 Å

PDB-1yvd:
GppNHp-Bound Rab22 GTPase
Method: X-RAY DIFFRACTION / Resolution: 1.93 Å

PDB-1yzk:
GppNHp bound Rab11 GTPase
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-1yzl:
GppNHp-Bound Rab9 GTPase
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-1yzm:
Structure of Rabenosyn (458-503), Rab4 binding domain
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-1yzn:
GppNHp-Bound Ypt1p GTPase
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

PDB-1yzq:
GppNHp-Bound Rab6 GTPase
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

PDB-1yzt:
GppNHp-Bound Rab21 GTPase at 2.05 A Resolution
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-1yzu:
GppNHp-Bound Rab21 GTPase at 2.50 A Resolution
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-1z06:
GppNHp-Bound Rab33 GTPase
Method: X-RAY DIFFRACTION / Resolution: 1.81 Å

PDB-1z07:
GppNHp-Bound Rab5c G55Q mutant GTPase
Method: X-RAY DIFFRACTION / Resolution: 1.81 Å

PDB-1z08:
GppNHp-Bound Rab21 Q53G mutant GTPase
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-1z0a:
GDP-Bound Rab2A GTPase
Method: X-RAY DIFFRACTION / Resolution: 2.12 Å

PDB-1z0d:
GDP-Bound Rab5c GTPase
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-1z0f:
GDP-Bound Rab14 GTPase
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-1z0i:
GDP-Bound Rab21 GTPase
Method: X-RAY DIFFRACTION / Resolution: 2.33 Å

PDB-1z0j:
Structure of GTP-Bound Rab22Q64L GTPase in complex with the minimal Rab binding domain of Rabenosyn-5
Method: X-RAY DIFFRACTION / Resolution: 1.32 Å

PDB-1z0k:
Structure of GTP-Bound Rab4Q67L GTPase in complex with the central Rab binding domain of Rabenosyn-5
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

PDB-1z22:
GDP-Bound Rab23 GTPase crystallized in C222(1) space group
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

PDB-1z2a:
GDP-Bound Rab23 GTPase crystallized in P2(1)2(1)2(1) space group
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-GNP:
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER / GppNHp, GMPPNP, energy-carrying molecule analogue*YM

ChemComp-HOH:
WATER

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

ChemComp-PO4:
PHOSPHATE ION

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-GOL:
GLYCEROL

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

Source
  • homo sapiens (human)
  • mus musculus (house mouse)
  • saccharomyces cerevisiae (brewer's yeast)
KeywordsPROTEIN TRANSPORT / Rab GTPase / Rab4 / vesicular trafficking / Rab22 / Rab11 / Rab9 / Rab Effector / Rabenosyn / Ypt1p GTPase / Rab6 / Rab21 / Rab33b GTPase / Rab5 / Rab2 / Rab5c / Rab14 / Rab22 GTPase / Endosomal trafficking / Rab GTPases / effector complex / Rab23 / Vesicular transport

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